Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

14210733 .. 14212324

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTCCCATGTTCGCCGGCAAGACAACCGCTCTCCTACGCCGGATCAAGTCCGAGGGCGCCAACGGCAGGAATGTGGCGATGATAAAATCAAGCAAGGATAACAGATACGCCGTCGATTCGGTGGTGACTCATGATGGGGCGAAATTTCCATGCTGGGCGCTGCCGGATCTGTCCTCGTTTAGGCACAAATTTGGAGGAGATGCTTATGATAAGCTTGATGTTATTGGTATCGATGAGGCTCAATTTTTCGAAGATCTATATGATTTCTGCTGCACGGCTGCTGATCATGATGGGAAAACTGTGATTGTTGCAGGCTTGGATGGTGATTACTTAAGGAAAAGCTTTGGCTCGGTGCTTGATGTAGTGCCTCTTGCTGATACAGTGACCAAATTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACAGAGGAGACGAAGACTGAACTGATTGGTGGGGCTGATGTCTACATGCCTGTTTGTCGCCAACACTATGTCAATGGACAAGTTCTCATCAAATCTGCAAGAAGTGTTGTGGAGTCTCATAAATTTAAGAGTGGCACCATTTCAGAAGCAGCTCCAGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

203

Amino Acids

22.2

Weight (kDa)

7.61

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	1 - 172	1.1e-51	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 581
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	53, 177
AcsI	RAATTY	3 cut(s)	146, 191, 569
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	69, 183
AflII	CTTAAG	1 cut(s)	334
AluBI	AGCT	6 cut(s)	217, 345, 401, 428, 599, 605
AluI	AGCT	6 cut(s)	217, 345, 401, 428, 599, 605
Alw26I	GTCTC	2 cut(s)	449, 567
AlwI	GGATC	2 cut(s)	53, 177
ApeKI	GCWGC	4 cut(s)	163, 273, 281, 596
ApoI	RAATTY	3 cut(s)	146, 191, 569
AspLEI	GCGC	2 cut(s)	62, 163
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	2 cut(s)	139, 338
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	440
BanI	GGYRCC	2 cut(s)	59, 581
BbsI	GAAGAC	2 cut(s)	452, 467
BbvI	GCAGC	4 cut(s)	150, 260, 268, 608
BccI	CCATC	3 cut(s)	131, 287, 317
BceAI	ACGGC	3 cut(s)	82, 98, 294
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	449, 567
BfoI	RGCGCY	2 cut(s)	63, 164
BfrI	CTTAAG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	164, 274, 282, 597
BlsI	GCNGC	4 cut(s)	165, 275, 283, 598
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	4 cut(s)	6, 7, 61, 583
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	452, 467
BpmI	CTGGAG	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 183
Bse118I	RCCGGY	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	440
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	69, 183
BseMII	CTCAG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	213, 467
BseXI	GCAGC	4 cut(s)	150, 260, 268, 608
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	259
BshNI	GGYRCC	2 cut(s)	59, 581
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	18, 43, 167
BslI	CCNNNNNNNGG	2 cut(s)	69, 183
BsmAI	GTCTC	2 cut(s)	449, 567
BsmBI	CGTCTC	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	45, 169, 256, 286
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	432
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	2 cut(s)	133, 289
BspLI	GGNNCC	4 cut(s)	6, 7, 61, 583
BspPI	GGATC	2 cut(s)	53, 177
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	2 cut(s)	59, 581
BspTI	CTTAAG	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	45, 169, 256, 286
BssNI	GRCGYC	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	304, 385
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	19, 316
BstDEI	CTNAG	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	2 cut(s)	63, 164
BstHHI	GCGC	2 cut(s)	62, 163
BstKTI	GATC	4 cut(s)	48, 172, 259, 289
BstMAI	GTCTC	2 cut(s)	449, 567
BstMBI	GATC	4 cut(s)	45, 169, 256, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 602
BstNSI	RCATGY	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	150, 260, 268, 608
BstV2I	GAAGAC	2 cut(s)	452, 467
BstX2I	RGATCY	2 cut(s)	169, 256
BstYI	RGATCY	2 cut(s)	169, 256
Bsu15I	ATCGAT	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	440
BsuTUI	ATCGAT	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	19, 316
CciI	TCATGA	2 cut(s)	133, 289
CfoI	GCGC	2 cut(s)	62, 163
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	234
CviAII	CATG	5 cut(s)	10, 134, 153, 290, 493
DdeI	CTNAG	1 cut(s)	440
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	4 cut(s)	47, 171, 258, 288
DpnII	GATC	4 cut(s)	45, 169, 256, 286
Eco47I	GGWCC	1 cut(s)	5
Eco81I	CCTNAGG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	5 cut(s)	13, 137, 156, 293, 496
FatI	CATG	5 cut(s)	9, 133, 152, 289, 492
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	164, 274, 282, 597
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	164, 274, 282, 597
GlaI	GCGC	2 cut(s)	61, 162
GluI	GCNGC	4 cut(s)	164, 274, 282, 597
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	585
HaeII	RGCGCY	2 cut(s)	63, 164
HapII	CCGG	3 cut(s)	18, 43, 167
HhaI	GCGC	2 cut(s)	62, 163
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	13, 137, 156, 293, 496
Hin6I	GCGC	2 cut(s)	60, 161
HinP1I	GCGC	2 cut(s)	60, 161
HindIII	AAGCTT	2 cut(s)	215, 343
HinfI	GANTC	3 cut(s)	119, 130, 560
HpaII	CCGG	3 cut(s)	18, 43, 167
HphI	GGTGA	2 cut(s)	139, 338
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	55, 592
Hpy188III	TCNNGA	2 cut(s)	134, 290
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	304, 385
HpyCH4V	TGCA	3 cut(s)	276, 314, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 602
HpyF3I	CTNAG	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	13, 137, 156, 293, 496
HspAI	GCGC	2 cut(s)	60, 161
KasI	GGCGCC	1 cut(s)	59
KflI	GGGWCCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	45, 169, 256, 286
LmnI	GCTCC	1 cut(s)	604
LpnPI	CCDG	8 cut(s)	31, 55, 56, 142, 180, 300, 452, 510
Lsp1109I	GCAGC	4 cut(s)	150, 260, 268, 608
LweI	GCATC	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	127, 385
MalI	GATC	4 cut(s)	47, 171, 258, 288
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	4 cut(s)	45, 169, 256, 286
MboII	GAAGA	3 cut(s)	266, 457, 472
MflI	RGATCY	2 cut(s)	169, 256
MluCI	AATT	5 cut(s)	146, 191, 245, 392, 569
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	124, 569
MnlI	CCTC	7 cut(s)	49, 187, 191, 232, 381, 435, 445
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	2 cut(s)	335, 573
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	3 cut(s)	18, 43, 167
MwoI	GCNNNNNNNGC	2 cut(s)	66, 602
NaeI	GCCGGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	60
NdeII	GATC	4 cut(s)	45, 169, 256, 286
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	5 cut(s)	13, 137, 156, 293, 496
NlaIV	GGNNCC	4 cut(s)	6, 7, 61, 583
NmuCI	GTSAC	2 cut(s)	127, 385
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	252
PagI	TCATGA	2 cut(s)	133, 289
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	165, 275, 283, 598
PleI	GAGTC	2 cut(s)	124, 568
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	2 cut(s)	124, 568
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	6, 7, 61, 583
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	2 cut(s)	169, 256
SaqAI	TTAA	2 cut(s)	335, 573
SatI	GCNGC	4 cut(s)	164, 274, 282, 597
Sau3AI	GATC	4 cut(s)	45, 169, 256, 286
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	2 cut(s)	124, 569
SetI	ASST	6 cut(s)	219, 347, 403, 430, 601, 607
SfaNI	GCATC	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	5 cut(s)	146, 191, 245, 392, 569
SsiI	CCGC	1 cut(s)	30
SspDI	GGCGCC	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	304, 385
TaqI	TCGA	4 cut(s)	117, 234, 252, 403
TasI	AATT	5 cut(s)	146, 191, 245, 392, 569
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	335, 573
Tru9I	TTAA	2 cut(s)	335, 573
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	127, 385
TseI	GCWGC	4 cut(s)	163, 273, 281, 596
Tsp45I	GTSAC	2 cut(s)	127, 385
TspRI	CASTG	1 cut(s)	390
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	5
XagI	CCTNNNNNAGG	1 cut(s)	181
XapI	RAATTY	3 cut(s)	146, 191, 569
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.