Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

13855283 .. 13855978

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCACTATTGTTCTATAGTGAAAGCGGTGGAAAAGCCCAAATCTTCAACCCCTCCTCTTTCTGCAACACAAAATCCATGGCCTCCTTCAAGCCCTCCATTCCCCCCACCAGTGACTCTTCTACCTCCGGCGAGGTCCATGTTACCATGGGTCCCATGTTCGCCGGCAAAACCACTGCCCTACTCCGCCGGATCAAGTTAGAGGGCAACAGCGGCAGGAATGTGACGCACGACGGGGTGAAGTTTCCGTGCTGGCCGTTGTCTGATCTGTCGTCGTTTCGTGTTCAATCTTTGTTGGGTTTATGTCAATTCTTATCTTCTTATTTATTTAATAATTATTTGGGCTATTGTTTTATTAAAGTAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

124

Amino Acids

13.52

Weight (kDa)

9.36

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	27, 187, 213
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	49, 91, 287
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	81, 254
AspS9I	GGNCC	2 cut(s)	136, 152
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	136, 152
BceAI	ACGGC	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	136, 152
BmgT120I	GGNCC	2 cut(s)	136, 152
BmiI	GGNNCC	2 cut(s)	153, 154
BsaJI	CCNNGG	2 cut(s)	78, 147
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	78, 147
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	83, 256
BsiSI	CCGG	3 cut(s)	129, 165, 190
BslFI	GGGAC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	83, 256
Bsp143I	GATC	2 cut(s)	192, 265
Bsp19I	CCATGG	2 cut(s)	78, 147
BspACI	CCGC	3 cut(s)	27, 187, 213
BspANI	GGCC	2 cut(s)	83, 256
BspLI	GGNNCC	2 cut(s)	153, 154
BspPI	GGATC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	78, 147
BssMI	GATC	2 cut(s)	192, 265
BssT1I	CCWWGG	2 cut(s)	78, 147
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	166, 254
BstDSI	CCRYGG	2 cut(s)	78, 147
BstKTI	GATC	2 cut(s)	195, 268
BstMBI	GATC	2 cut(s)	192, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	83, 256
BtgI	CCRYGG	2 cut(s)	78, 147
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	118, 174
Cac8I	GCNNGC	2 cut(s)	166, 254
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	136, 152
CseI	GACGC	1 cut(s)	235
CviAII	CATG	4 cut(s)	79, 140, 148, 157
CviJI	RGCY	5 cut(s)	38, 83, 94, 256, 345
CviKI_1	RGCY	5 cut(s)	38, 83, 94, 256, 345
DpnI	GATC	2 cut(s)	194, 267
DpnII	GATC	2 cut(s)	192, 265
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	78, 147
Eco47I	GGWCC	2 cut(s)	136, 152
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	78, 147
ErhI	CCWWGG	2 cut(s)	78, 147
FaeI	CATG	4 cut(s)	82, 143, 151, 160
FaiI	YATR	6 cut(s)	18, 80, 141, 149, 158, 304
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	4 cut(s)	78, 139, 147, 156
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	83, 256
HapII	CCGG	3 cut(s)	129, 165, 190
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	82, 143, 151, 160
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	3 cut(s)	129, 165, 190
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	265
Hpy99I	CGWCG	2 cut(s)	236, 277
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	82, 143, 151, 160
KflI	GGGWCCC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	192, 265
LpnPI	CCDG	6 cut(s)	124, 142, 178, 202, 203, 238
MaeIII	GTNAC	3 cut(s)	113, 142, 223
MalI	GATC	2 cut(s)	194, 267
MboI	GATC	2 cut(s)	192, 265
MboII	GAAGA	3 cut(s)	37, 111, 309
MluCI	AATT	2 cut(s)	308, 334
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	64, 67, 94, 106, 127, 136, 196
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	330, 357
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	3 cut(s)	129, 165, 190
MwoI	GCNNNNNNNGC	1 cut(s)	213
NaeI	GCCGGC	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	78, 147
NdeII	GATC	2 cut(s)	192, 265
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	82, 143, 151, 160
NlaIV	GGNNCC	2 cut(s)	153, 154
NmuCI	GTSAC	2 cut(s)	113, 223
PdiI	GCCGGC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	153, 154
PspPI	GGNCC	2 cut(s)	136, 152
PspPPI	RGGWCCY	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	330, 357
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	192, 265
Sau96I	GGNCC	2 cut(s)	136, 152
SchI	GAGTC	1 cut(s)	110
SetI	ASST	2 cut(s)	128, 138
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	2 cut(s)	136, 152
Sse9I	AATT	2 cut(s)	308, 334
SsiI	CCGC	3 cut(s)	27, 187, 213
StyI	CCWWGG	2 cut(s)	78, 147
TasI	AATT	2 cut(s)	308, 334
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	330, 357
Tru9I	TTAA	2 cut(s)	330, 357
TscAI	CASTG	2 cut(s)	118, 181
TseFI	GTSAC	2 cut(s)	113, 223
Tsp45I	GTSAC	2 cut(s)	113, 223
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	118, 181
VpaK11BI	GGWCC	2 cut(s)	136, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.