Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

3380415 .. 3382108

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAAAAGATAAATTTACCTCCAAAACCAAAAGTTTCCGATTTCCCTCCAAATCTTTCAAAAACTCAAATCAAATGCTGTTCCATTTCTCTCCACTCCCACCCTCTCTCTCTATTTATTCAGATCATGAAAGCTTTCGCCTTCCCATCTCTCTTCTTCCCTCTCCAAATCTTCAACCCCTCCTCTTTCTGCAACACAAAATCCATGGCCTCCTTCAAGCCCTCCATTCCCCCCACCAGTGACTCTTCTACCTCCGGCGAGGTCCATGTCATCATGGGTCCCATGTTCGCCGGCAAAACCACTGCCCTACTCCGCCGGATCAAGTCGGAGGGCAACAGCGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATACAAGATACGCCATTGATTCGGTTGTGACGCACGATGGGATGAAGTTTCCGTGCTGGGCGCTGCCTGATCTGTCATCGTTTCGGCAGAATTTTGGAGGAGATGCTTATGACAAGTTTTTTGAAGATCTATATGATTTCTGCTGCATGGCTGCTGATCATGATGGGAAAACTGTGGTTGTTGCAGGCTTGGATGGCGATTACTTGAGGAGGAGCTTTGGCTCGGTTCTTGACATAATACCTCTTGCTGATTCTGTGACCAAGTTGACGGCTCGATGCGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACTAGGACGGAACTGATTGGTGGTGCTGATGTGTACATGCCTGTGTGTCGCCAACATTATGTCAACGGACAAGTTCTCATTAAAACAGCAAGAAGTGTAGTGGAGTCCCATAAATTTAAGAGTGTCAGTGACACATTTTCTGAAGCAACTCCAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

287

Amino Acids

31.64

Weight (kDa)

9.0

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	313, 339
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	13, 463, 812
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	60, 175, 217, 497
AluBI	AGCT	3 cut(s)	134, 588, 671
AluI	AGCT	3 cut(s)	134, 588, 671
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	436, 516, 524
ApoI	RAATTY	3 cut(s)	13, 463, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	262, 278
AvaII	GGWCC	2 cut(s)	262, 278
AxyI	CCTNAGG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	423, 503, 511
BccI	CCATC	4 cut(s)	154, 404, 530, 560
BceAI	ACGGC	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	340, 437, 517, 525
BlsI	GCNGC	4 cut(s)	341, 438, 518, 526
Bme18I	GGWCC	2 cut(s)	262, 278
BmgT120I	GGNCC	2 cut(s)	262, 278
BmiI	GGNNCC	2 cut(s)	279, 280
BmsI	GCATC	2 cut(s)	466, 638
BpiI	GAAGAC	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	237, 851
Bse21I	CCTNAGG	1 cut(s)	683
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	420, 571
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	2 cut(s)	237, 851
BseRI	GAGGAG	5 cut(s)	172, 486, 595, 598, 710
BseXI	GCAGC	3 cut(s)	423, 503, 511
BseYI	CCCAGC	1 cut(s)	429
BshFI	GGCC	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	255, 291, 316
BslFI	GGGAC	2 cut(s)	264, 790
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	2 cut(s)	264, 790
BsnI	GGCC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	123, 318, 442, 499, 529
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	313, 339
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	675
BspHI	TCATGA	2 cut(s)	126, 532
BspLI	GGNNCC	2 cut(s)	279, 280
BspPI	GGATC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	237, 851
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	5 cut(s)	123, 318, 442, 499, 529
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	2 cut(s)	158, 250
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	2 cut(s)	292, 559
BstDEI	CTNAG	1 cut(s)	683
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	420, 571
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	5 cut(s)	126, 321, 445, 502, 532
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	5 cut(s)	123, 318, 442, 499, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 567
BstNSI	RCATGY	1 cut(s)	739
BstV1I	GCAGC	3 cut(s)	423, 503, 511
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	420, 571
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	244, 300, 832
Cac8I	GCNNGC	2 cut(s)	292, 559
CciI	TCATGA	2 cut(s)	126, 532
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	262, 278
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	8 cut(s)	127, 205, 266, 274, 283, 520, 533, 736
CviJI	RGCY	9 cut(s)	134, 209, 220, 524, 561, 588, 594, 644, 671
CviKI_1	RGCY	9 cut(s)	134, 209, 220, 524, 561, 588, 594, 644, 671
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	5 cut(s)	125, 320, 444, 501, 531
DpnII	GATC	5 cut(s)	123, 318, 442, 499, 529
Eam1104I	CTCTTC	2 cut(s)	158, 250
EarI	CTCTTC	2 cut(s)	158, 250
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	262, 278
Eco57I	CTGAAG	1 cut(s)	861
Eco81I	CCTNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	8 cut(s)	130, 208, 269, 277, 286, 523, 536, 739
FaqI	GGGAC	2 cut(s)	264, 790
FatI	CATG	8 cut(s)	126, 204, 265, 273, 282, 519, 532, 735
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	340, 437, 517, 525
FokI	GGATG	2 cut(s)	427, 578
Fsp4HI	GCNGC	4 cut(s)	340, 437, 517, 525
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	4 cut(s)	340, 437, 517, 525
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	834
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	3 cut(s)	255, 291, 316
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	8 cut(s)	130, 208, 269, 277, 286, 523, 536, 739
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	2 cut(s)	639, 763
HindII	GTYRAC	2 cut(s)	639, 763
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	4 cut(s)	242, 392, 623, 803
HpaII	CCGG	3 cut(s)	255, 291, 316
Hpy166II	GTNNAC	3 cut(s)	639, 733, 763
Hpy188I	TCNGA	4 cut(s)	40, 123, 328, 841
Hpy188III	TCNNGA	3 cut(s)	127, 533, 602
Hpy8I	GTNNAC	3 cut(s)	639, 733, 763
HpyAV	CCTTC	2 cut(s)	151, 223
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	192, 519, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 567
HpyF3I	CTNAG	1 cut(s)	683
Hsp92II	CATG	8 cut(s)	130, 208, 269, 277, 286, 523, 536, 739
HspAI	GCGC	1 cut(s)	434
KflI	GGGWCCC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	123, 318, 442, 499, 529
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	3 cut(s)	423, 503, 511
LweI	GCATC	2 cut(s)	466, 638
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	4 cut(s)	239, 400, 628, 827
MalI	GATC	5 cut(s)	125, 320, 444, 501, 531
MboI	GATC	5 cut(s)	123, 318, 442, 499, 529
MboII	GAAGA	6 cut(s)	145, 148, 163, 237, 509, 700
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	3 cut(s)	13, 463, 812
MlyI	GAGTC	2 cut(s)	236, 812
MmeI	TCCRAC	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	780, 816
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	3 cut(s)	255, 291, 316
MwoI	GCNNNNNNNGC	2 cut(s)	339, 567
NaeI	GCCGGC	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	5 cut(s)	123, 318, 442, 499, 529
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	8 cut(s)	130, 208, 269, 277, 286, 523, 536, 739
NlaIV	GGNNCC	2 cut(s)	279, 280
NmuCI	GTSAC	4 cut(s)	239, 400, 628, 827
NspI	RCATGY	1 cut(s)	739
PagI	TCATGA	2 cut(s)	126, 532
PdiI	GCCGGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	392, 623
PkrI	GCNGC	4 cut(s)	341, 438, 518, 526
PleI	GAGTC	2 cut(s)	236, 811
PpsI	GAGTC	2 cut(s)	236, 811
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	279, 280
PspPI	GGNCC	2 cut(s)	262, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	2 cut(s)	780, 816
SatI	GCNGC	4 cut(s)	340, 437, 517, 525
Sau3AI	GATC	5 cut(s)	123, 318, 442, 499, 529
Sau96I	GGNCC	2 cut(s)	262, 278
SchI	GAGTC	2 cut(s)	236, 812
SetI	ASST	7 cut(s)	22, 136, 254, 264, 590, 616, 673
SfaNI	GCATC	2 cut(s)	466, 638
SinI	GGWCC	2 cut(s)	262, 278
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	3 cut(s)	13, 463, 812
SsiI	CCGC	2 cut(s)	313, 339
SspMI	CTAG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	365, 646
TasI	AATT	3 cut(s)	13, 463, 812
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	392, 623
Tru1I	TTAA	2 cut(s)	780, 816
Tru9I	TTAA	2 cut(s)	780, 816
TscAI	CASTG	3 cut(s)	244, 307, 832
TseFI	GTSAC	4 cut(s)	239, 400, 628, 827
TseI	GCWGC	3 cut(s)	436, 516, 524
Tsp45I	GTSAC	4 cut(s)	239, 400, 628, 827
TspDTI	ATGAA	3 cut(s)	17, 143, 431
TspGWI	ACGGA	4 cut(s)	414, 707, 722, 780
TspRI	CASTG	3 cut(s)	244, 307, 832
VpaK11BI	GGWCC	2 cut(s)	262, 278
XapI	RAATTY	3 cut(s)	13, 463, 812
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.