Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

9365413 .. 9367114

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1121200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTGCTCCATTTCTCTCCACTCCCACCCTCTCTCTCTCTATTTATTCCGATAATGAAGGCTTTCGCCTTCCCATCTCTCTTCTTACCTCCCCAAATCTTCAACACCCCCTCTTTCTGCAACACAAAATCCATGGCCTCCTTCAAGCCCTCCATTCCCCCCACCAGTGACTCTTCTACCTCCGGCGAGGTCCATGTCATCATGGGTCCCATGTTCGCCGGCAAAACCACCGCCCTACTCCGCCGGATCAAGTCGGAGGGGAACAGCGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATACAAGATACGCCATTGATTCGGTTGTGACGCACGATGGGATGAAGTTTCCGTGCTGGGCGCTGCCTGATCTGTCATCGTTTCGGAAGAATTTTGGAGGAGATGCTTATGACAAGCTTGATGTCATTGGAATCGACGAGGCTCAGTTTTTTGAAGATCTATATGATTTCTGCTGCATGGCTGCTGATCATGATGGGAAAACTGTGGTTGTTGCAGGCTTGGATGGCGATTACTTGAGGAGGAGCTTTGGCTCGGTTCTTGACGTAATACCTCTTGCTGATTCTGTGACCAAGTTGACGGCGCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACTAGGACGGAACTGATTGGTGGTGCTGATGTATACATGCCTGTGTGTCGCCAACATTATGTCAACGGACAAGTTCTCATTAAAACAGCAAGAAGTGTAGTGGAGTCCCATAAATTTAAGAGTGTCAGTGACACATTTTCTAAAGCAACTCCAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

273

Amino Acids

29.94

Weight (kDa)

8.42

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	62 - 239	1.9e-52	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	690
AccII	CGCG	1 cut(s)	604
AciI	CCGC	3 cut(s)	231, 241, 267
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	391, 770
AgsI	TTSAA	3 cut(s)	103, 145, 455
AluBI	AGCT	3 cut(s)	418, 546, 629
AluI	AGCT	3 cut(s)	418, 546, 629
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	4, 364, 474, 482
ApoI	RAATTY	2 cut(s)	391, 770
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	364, 604
AspS9I	GGNCC	2 cut(s)	190, 206
AvaII	GGWCC	2 cut(s)	190, 206
AxyI	CCTNAGG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	3 cut(s)	351, 461, 469
BccI	CCATC	4 cut(s)	82, 332, 488, 518
BceAI	ACGGC	1 cut(s)	615
BciVI	GTATCC	1 cut(s)	295
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	5 cut(s)	5, 268, 365, 475, 483
BlsI	GCNGC	5 cut(s)	6, 269, 366, 476, 484
Bme18I	GGWCC	2 cut(s)	190, 206
BmgT120I	GGNCC	2 cut(s)	190, 206
BmiI	GGNNCC	2 cut(s)	207, 208
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	165, 809
Bse21I	CCTNAGG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	348, 529
BseMII	CTCAG	2 cut(s)	458, 632
BseNI	ACTGG	2 cut(s)	165, 809
BseRI	GAGGAG	4 cut(s)	414, 553, 556, 668
BseXI	GCAGC	3 cut(s)	351, 461, 469
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	183, 219, 244
BslFI	GGGAC	2 cut(s)	192, 748
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	192, 748
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	246, 370, 457, 487
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	231, 241, 267
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	457, 633
BspFNI	CGCG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	207, 208
BspPI	GGATC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	165, 809
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	246, 370, 457, 487
BssNAI	GTATAC	1 cut(s)	691
BssT1I	CCWWGG	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	691
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	86, 178
BstC8I	GCNNGC	2 cut(s)	220, 517
BstDEI	CTNAG	2 cut(s)	444, 641
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	348, 529
BstFNI	CGCG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	364, 604
BstKTI	GATC	4 cut(s)	249, 373, 460, 490
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	4 cut(s)	246, 370, 457, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	697
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	351, 461, 469
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BstZ17I	GTATAC	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	2 cut(s)	296, 619
BtsCI	GGATG	2 cut(s)	348, 529
BtsIMutI	CAGTG	2 cut(s)	172, 790
Cac8I	GCNNGC	2 cut(s)	220, 517
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	2 cut(s)	364, 604
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	190, 206
CseI	GACGC	1 cut(s)	340
CviAII	CATG	7 cut(s)	133, 194, 202, 211, 478, 491, 694
DdeI	CTNAG	2 cut(s)	444, 641
DpnI	GATC	4 cut(s)	248, 372, 459, 489
DpnII	GATC	4 cut(s)	246, 370, 457, 487
Eam1104I	CTCTTC	2 cut(s)	86, 178
EarI	CTCTTC	2 cut(s)	86, 178
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	190, 206
Eco81I	CCTNAGG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	7 cut(s)	136, 197, 205, 214, 481, 494, 697
FaqI	GGGAC	2 cut(s)	192, 748
FatI	CATG	7 cut(s)	132, 193, 201, 210, 477, 490, 693
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	5, 268, 365, 475, 483
FokI	GGATG	2 cut(s)	355, 536
Fsp4HI	GCNGC	5 cut(s)	5, 268, 365, 475, 483
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	2 cut(s)	363, 603
GluI	GCNGC	5 cut(s)	5, 268, 365, 475, 483
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	3 cut(s)	183, 219, 244
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	2 cut(s)	364, 604
Hin1II	CATG	7 cut(s)	136, 197, 205, 214, 481, 494, 697
Hin6I	GCGC	2 cut(s)	362, 602
HinP1I	GCGC	2 cut(s)	362, 602
HincII	GTYRAC	2 cut(s)	597, 721
HindII	GTYRAC	2 cut(s)	597, 721
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	5 cut(s)	170, 320, 432, 581, 761
HpaII	CCGG	3 cut(s)	183, 219, 244
Hpy166II	GTNNAC	3 cut(s)	597, 691, 721
Hpy188I	TCNGA	3 cut(s)	51, 256, 387
Hpy188III	TCNNGA	2 cut(s)	491, 560
Hpy8I	GTNNAC	3 cut(s)	597, 691, 721
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	52, 79, 151
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	120, 477, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpyF3I	CTNAG	2 cut(s)	444, 641
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	7 cut(s)	136, 197, 205, 214, 481, 494, 697
HspAI	GCGC	2 cut(s)	362, 602
KflI	GGGWCCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	246, 370, 457, 487
LmnI	GCTCC	2 cut(s)	12, 543
Lsp1109I	GCAGC	3 cut(s)	351, 461, 469
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	4 cut(s)	167, 328, 586, 785
MalI	GATC	4 cut(s)	248, 372, 459, 489
MboI	GATC	4 cut(s)	246, 370, 457, 487
MboII	GAAGA	6 cut(s)	73, 91, 165, 400, 467, 658
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	2 cut(s)	391, 770
MlyI	GAGTC	2 cut(s)	164, 770
MmeI	TCCRAC	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	738, 774
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	3 cut(s)	183, 219, 244
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	1 cut(s)	525
NaeI	GCCGGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	246, 370, 457, 487
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	7 cut(s)	136, 197, 205, 214, 481, 494, 697
NlaIV	GGNNCC	2 cut(s)	207, 208
NmuCI	GTSAC	4 cut(s)	167, 328, 586, 785
NspI	RCATGY	1 cut(s)	697
PagI	TCATGA	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	320, 432, 581
PkrI	GCNGC	5 cut(s)	6, 269, 366, 476, 484
PleI	GAGTC	2 cut(s)	164, 769
PpsI	GAGTC	2 cut(s)	164, 769
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	207, 208
PspPI	GGNCC	2 cut(s)	190, 206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	738, 774
SatI	GCNGC	5 cut(s)	5, 268, 365, 475, 483
Sau3AI	GATC	4 cut(s)	246, 370, 457, 487
Sau96I	GGNCC	2 cut(s)	190, 206
SchI	GAGTC	2 cut(s)	164, 770
SetI	ASST	8 cut(s)	91, 182, 192, 420, 548, 567, 574, 631
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	190, 206
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	2 cut(s)	391, 770
SsiI	CCGC	3 cut(s)	231, 241, 267
SspMI	CTAG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	2 cut(s)	293, 435
TasI	AATT	2 cut(s)	391, 770
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	320, 432, 581
Tru1I	TTAA	2 cut(s)	738, 774
Tru9I	TTAA	2 cut(s)	738, 774
TscAI	CASTG	2 cut(s)	172, 790
TseFI	GTSAC	4 cut(s)	167, 328, 586, 785
TseI	GCWGC	4 cut(s)	4, 364, 474, 482
Tsp45I	GTSAC	4 cut(s)	167, 328, 586, 785
TspDTI	ATGAA	2 cut(s)	71, 359
TspGWI	ACGGA	4 cut(s)	342, 665, 680, 738
TspRI	CASTG	2 cut(s)	172, 790
VpaK11BI	GGWCC	2 cut(s)	190, 206
XapI	RAATTY	2 cut(s)	391, 770
XceI	RCATGY	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.