Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

21926648 .. 21927053

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1090400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTTTCTTCAAGCCCTCCATTCCCCCCACCAGGGACTCTTCTACCTCCGGCGAGGTATATGTCACCATGGGTCCCATGTTCGCCGGCCAAACCACCACCCTACTCCGCCCGATCAAGTTAGAGGGCAACAACGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATATGAGATACGCCATTGATTCAGTTGTGATGCATGACGGGGTGAAGTTTTCGTGCTGGGCGCTGTCAGATTTGTCGTCGTTTCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

9.36

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	18 - 75	1e-10	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	33, 34
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	58, 223
AvaII	GGWCC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	34
BfoI	RGCGCY	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	75, 76
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	33, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 34
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	33, 69
BseLI	CCNNNNNNNGG	2 cut(s)	33, 34
BseYI	CCCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	51, 87
BslFI	GGGAC	2 cut(s)	50, 60
BslI	CCNNNNNNNGG	2 cut(s)	33, 34
BsmFI	GGGAC	2 cut(s)	50, 60
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	75, 76
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	33, 69
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	3 cut(s)	70, 79, 203
CviJI	RGCY	3 cut(s)	5, 16, 90
CviKI_1	RGCY	3 cut(s)	5, 16, 90
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	73, 82, 206
FaiI	YATR	6 cut(s)	61, 63, 71, 80, 173, 204
FaqI	GGGAC	2 cut(s)	50, 60
FatI	CATG	3 cut(s)	69, 78, 202
GlaI	GCGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	51, 87
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	73, 82, 206
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	2 cut(s)	38, 188
HpaII	CCGG	2 cut(s)	51, 87
HphI	GGTGA	2 cut(s)	58, 223
Hpy188I	TCNGA	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	73, 82, 206
HspAI	GCGC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	19, 46, 64, 100, 124, 211
LweI	GCATC	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	28, 49, 58, 118
Mph1103I	ATGCAT	1 cut(s)	204
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	1 cut(s)	259
MspI	CCGG	2 cut(s)	51, 87
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	135
NaeI	GCCGGC	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	73, 82, 206
NlaIV	GGNNCC	2 cut(s)	75, 76
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	204
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	75, 76
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	2 cut(s)	50, 60
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	1 cut(s)	74
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.