Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

7966575 .. 7969511

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGGCGAAGTCTCATCTTGGACTTAAGACTCTATTCTTGGTTGAATATTTCAACGGAAAAGAAGTGGTTTCTCAACTTGAGAAGGAGTTCTCAACGATAAAACAGGAATACGATAAAACAGGAATCCATGGCCTCCTTCAAGCCCTCCATTCCCCCACCAGTGACTACTTTTCTACCTCCGGCGAGGTCCATGTCATCATGGGTCCCATGTTCGCCGGCAAAACCACCGCCCTACTCCGCCGGATCAAGTTGGAGGGCAACAGCGGCAGGAATGTGGCAATGATAAAATCTAGTAAGGATACGAGATACGCCATTGATTCAGTTGTGACGCACAACGGGGTGAAGTTTCCGTGCTGGGCGCTGTCTGATCTGTCGTCGTTTCGGCAGAGCTTTGGAGGAGATGCTGAGGACAAGGTAATTTTGGAAATTGTGCGGCATCTTTTATATGCAGAGAAGAGACGTGCTGAGTCTCACTCCGGCATTCGGCCCTCCGTCCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

169

Amino Acids

18.73

Weight (kDa)

9.32

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	231, 241, 267, 436
AclWI	GGATC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	47, 55, 143
AjiI	CACGTC	1 cut(s)	464
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw26I	GTCTC	3 cut(s)	18, 454, 477
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	2 cut(s)	133, 488
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	3 cut(s)	190, 206, 489
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	190, 206
BbvCI	CCTCAGC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	18, 454, 477
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	268, 437
BlsI	GCNGC	2 cut(s)	269, 438
Bme18I	GGWCC	2 cut(s)	190, 206
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	3 cut(s)	190, 206, 489
BmiI	GGNNCC	2 cut(s)	207, 208
BmsI	GCATC	2 cut(s)	394, 448
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	399, 459
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	357
BshFI	GGCC	2 cut(s)	135, 490
BsiSI	CCGG	4 cut(s)	183, 219, 244, 480
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	3 cut(s)	18, 454, 477
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	135, 490
Bsp143I	GATC	2 cut(s)	246, 370
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	4 cut(s)	231, 241, 267, 436
BspANI	GGCC	2 cut(s)	135, 490
BspCNI	CTCAG	2 cut(s)	400, 460
BspLI	GGNNCC	2 cut(s)	207, 208
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	246, 370
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	452
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	408, 468
BstDSI	CCRYGG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	249, 373
BstMAI	GTCTC	3 cut(s)	18, 454, 477
BstMBI	GATC	2 cut(s)	246, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	135, 490
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	190, 206, 489
CseI	GACGC	1 cut(s)	340
CviAII	CATG	4 cut(s)	131, 194, 202, 211
CviJI	RGCY	4 cut(s)	135, 146, 393, 490
CviKI_1	RGCY	4 cut(s)	135, 146, 393, 490
DdeI	CTNAG	2 cut(s)	408, 468
DpnI	GATC	2 cut(s)	248, 372
DpnII	GATC	2 cut(s)	246, 370
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	190, 206
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	4 cut(s)	134, 197, 205, 214
FaiI	YATR	6 cut(s)	132, 195, 203, 212, 448, 450
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	4 cut(s)	130, 193, 201, 210
Fnu4HI	GCNGC	2 cut(s)	268, 437
Fsp4HI	GCNGC	2 cut(s)	268, 437
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	2 cut(s)	268, 437
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	135, 490
HapII	CCGG	4 cut(s)	183, 219, 244, 480
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	134, 197, 205, 214
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	4 cut(s)	31, 126, 320, 470
HpaII	CCGG	4 cut(s)	183, 219, 244, 480
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	79, 149
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	2 cut(s)	408, 468
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	134, 197, 205, 214
HspAI	GCGC	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	246, 370
LpnPI	CCDG	9 cut(s)	92, 108, 175, 196, 232, 256, 257, 343, 493
LweI	GCATC	2 cut(s)	394, 448
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	164, 328
MalI	GATC	2 cut(s)	248, 372
MboI	GATC	2 cut(s)	246, 370
MboII	GAAGA	1 cut(s)	469
MluCI	AATT	2 cut(s)	420, 429
MlyI	GAGTC	2 cut(s)	25, 479
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	146, 158, 181, 190, 250, 392, 403, 502
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	4 cut(s)	183, 219, 244, 480
Mva1269I	GAATGC	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	267
NaeI	GCCGGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	246, 370
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	134, 197, 205, 214
NlaIV	GGNNCC	2 cut(s)	207, 208
NmuCI	GTSAC	2 cut(s)	164, 328
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	126, 320
PkrI	GCNGC	2 cut(s)	269, 438
PleI	GAGTC	2 cut(s)	25, 478
PpsI	GAGTC	2 cut(s)	25, 478
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	207, 208
PspPI	GGNCC	3 cut(s)	190, 206, 489
PspPPI	RGGWCCY	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	268, 437
Sau3AI	GATC	2 cut(s)	246, 370
Sau96I	GGNCC	3 cut(s)	190, 206, 489
SchI	GAGTC	2 cut(s)	25, 479
SetI	ASST	5 cut(s)	182, 192, 395, 420, 466
SfaNI	GCATC	2 cut(s)	394, 448
SinI	GGWCC	2 cut(s)	190, 206
SmlI	CTYRAG	2 cut(s)	26, 80
SmoI	CTYRAG	2 cut(s)	26, 80
Sse9I	AATT	2 cut(s)	420, 429
SsiI	CCGC	4 cut(s)	231, 241, 267, 436
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	466
TasI	AATT	2 cut(s)	420, 429
TauI	GCSGC	2 cut(s)	270, 439
TfiI	GAWTC	2 cut(s)	126, 320
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	164, 328
Tsp45I	GTSAC	2 cut(s)	164, 328
TspGWI	ACGGA	3 cut(s)	72, 342, 484
TspRI	CASTG	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	190, 206
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.