Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

32488368 .. 32489869

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAATCCCTTCACTTCCCATCTCCTCTTTCCTTCTCTTCCCTAATTTCAAACCCCTCTTCTCACTCTAATCCCAAACCCATGGCTTCCTTCAAACCTTCCATCCCCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGGCAAGACCACCGCTCTCCTCCGCCGGATCAAGTCCGAGGGCGCCAGCGGCAGAAATGTGGTGATGATAAAATCGAGCAAGGATAATAGATATGCTGTTGATTCGGTTGTGACTCATGATGGGGCCAAGTTTCCGTGCTGGGCTTTGCCGGATCTGTCCTCGTTTAGGCTCAAATTTGGAGGAGATGCTTATGATAAGCTTGATGTTATTGGTATTGACGAGGCTCAGTTTTTCGAAGATCTATATGATTTCTGCTGCACGGCTGCTGATCATGATGGGAAGACTGTGATTGTTGCAGGCTTGGATGGTGATTACTTGAGGAGGAGCTTTGGCTCGGTGCTTGATGTAGTGCCTCTTGCTGATACAGTGACCAAGCTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACTGAGGAGACAAAGACTGAACTGATTGGTGGGGCTGATGTCTACATGCCTGTTTGTCGCCAACACTATGTCAACGGACAAGTTCTTATCAAAGCTGCAAGAACTGTTGTGGAGTCTCATAAATTTAAGAGTGGCACCATTTCAGAAGTAGCTCCAATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

247

Amino Acids

26.89

Weight (kDa)

8.47

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	38 - 215	1e-53	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 710
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	3 cut(s)	159, 169, 195
AclWI	GGATC	2 cut(s)	182, 306
AcsI	RAATTY	2 cut(s)	320, 698
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	51, 94
AjiI	CACGTC	1 cut(s)	124
AluBI	AGCT	7 cut(s)	346, 474, 523, 530, 557, 671, 728
AluI	AGCT	7 cut(s)	346, 474, 523, 530, 557, 671, 728
Alw26I	GTCTC	2 cut(s)	578, 696
AlwI	GGATC	2 cut(s)	182, 306
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	402, 410, 671
ApoI	RAATTY	2 cut(s)	320, 698
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	118, 134, 270
AsuHPI	GGTGA	2 cut(s)	220, 467
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	118, 134
AxyI	CCTNAGG	1 cut(s)	569
BanI	GGYRCC	2 cut(s)	188, 710
BbsI	GAAGAC	2 cut(s)	434, 581
BbvI	GCAGC	3 cut(s)	389, 397, 658
BccI	CCATC	5 cut(s)	28, 110, 260, 416, 446
BceAI	ACGGC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	578, 696
BfoI	RGCGCY	1 cut(s)	192
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	196, 403, 411, 672
BlsI	GCNGC	4 cut(s)	197, 404, 412, 673
Bme18I	GGWCC	2 cut(s)	118, 134
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	118, 134, 270
BmiI	GGNNCC	5 cut(s)	135, 136, 190, 271, 712
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	434, 581
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	484
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	81, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	81, 183
BseGI	GGATG	2 cut(s)	102, 457
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	386, 560, 570
BseRI	GAGGAG	6 cut(s)	15, 155, 342, 481, 484, 596
BseXI	GCAGC	3 cut(s)	389, 397, 658
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	2 cut(s)	188, 710
BsiSI	CCGG	4 cut(s)	111, 147, 172, 296
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	578, 696
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	174, 298, 385, 415
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	159, 169, 195
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	3 cut(s)	385, 561, 571
BspHI	TCATGA	2 cut(s)	262, 418
BspLI	GGNNCC	5 cut(s)	135, 136, 190, 271, 712
BspPI	GGATC	2 cut(s)	182, 306
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	2 cut(s)	188, 710
BsrBI	CCGCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	81, 183
BssMI	GATC	4 cut(s)	174, 298, 385, 415
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	433, 514, 682
Bst6I	CTCTTC	2 cut(s)	43, 64
BstACI	GRCGYC	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	148, 193, 445
BstDEI	CTNAG	3 cut(s)	372, 569, 579
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	102, 457
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	177, 301, 388, 418
BstMAI	GTCTC	2 cut(s)	578, 696
BstMBI	GATC	4 cut(s)	174, 298, 385, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	389, 397, 658
BstV2I	GAAGAC	2 cut(s)	434, 581
BstX2I	RGATCY	2 cut(s)	298, 385
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	2 cut(s)	298, 385
Bsu36I	CCTNAGG	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	102, 457
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	3 cut(s)	148, 193, 445
CciI	TCATGA	2 cut(s)	262, 418
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	118, 134, 270
CviAII	CATG	6 cut(s)	82, 130, 139, 263, 419, 622
DdeI	CTNAG	3 cut(s)	372, 569, 579
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	4 cut(s)	176, 300, 387, 417
DpnII	GATC	4 cut(s)	174, 298, 385, 415
Eam1104I	CTCTTC	2 cut(s)	43, 64
EarI	CTCTTC	2 cut(s)	43, 64
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	118, 134
Eco81I	CCTNAGG	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	6 cut(s)	85, 133, 142, 266, 422, 625
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	6 cut(s)	81, 129, 138, 262, 418, 621
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	4 cut(s)	196, 403, 411, 672
FokI	GGATG	2 cut(s)	89, 464
Fsp4HI	GCNGC	4 cut(s)	196, 403, 411, 672
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	196, 403, 411, 672
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	4 cut(s)	111, 147, 172, 296
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	85, 133, 142, 266, 422, 625
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	248, 259, 689
HpaII	CCGG	4 cut(s)	111, 147, 172, 296
HphI	GGTGA	2 cut(s)	220, 467
Hpy166II	GTNNAC	3 cut(s)	121, 619, 649
Hpy188I	TCNGA	2 cut(s)	184, 721
Hpy188III	TCNNGA	2 cut(s)	263, 419
Hpy8I	GTNNAC	3 cut(s)	121, 619, 649
HpyAV	CCTTC	4 cut(s)	20, 43, 100, 108
HpyCH4III	ACNGT	3 cut(s)	433, 514, 682
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	405, 443, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	3 cut(s)	372, 569, 579
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	85, 133, 142, 266, 422, 625
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
KflI	GGGWCCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	174, 298, 385, 415
LmnI	GCTCC	2 cut(s)	471, 733
LpnPI	CCDG	9 cut(s)	124, 160, 185, 205, 271, 309, 429, 581, 639
Lsp1109I	GCAGC	3 cut(s)	389, 397, 658
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	256, 514
MalI	GATC	4 cut(s)	176, 300, 387, 417
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	4 cut(s)	174, 298, 385, 415
MboII	GAAGA	5 cut(s)	30, 51, 395, 439, 586
MflI	RGATCY	2 cut(s)	298, 385
MluCI	AATT	3 cut(s)	45, 320, 698
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	253, 698
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	4 cut(s)	111, 147, 172, 296
MwoI	GCNNNNNNNGC	1 cut(s)	195
NaeI	GCCGGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	174, 298, 385, 415
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	6 cut(s)	85, 133, 142, 266, 422, 625
NlaIV	GGNNCC	5 cut(s)	135, 136, 190, 271, 712
NmuCI	GTSAC	2 cut(s)	256, 514
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	381
PagI	TCATGA	2 cut(s)	262, 418
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	197, 404, 412, 673
PleI	GAGTC	2 cut(s)	253, 697
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	2 cut(s)	253, 697
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	285
PspN4I	GGNNCC	5 cut(s)	135, 136, 190, 271, 712
PspPI	GGNCC	3 cut(s)	118, 134, 270
PspPPI	RGGWCCY	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	298, 385
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	4 cut(s)	196, 403, 411, 672
Sau3AI	GATC	4 cut(s)	174, 298, 385, 415
Sau96I	GGNCC	3 cut(s)	118, 134, 270
SchI	GAGTC	2 cut(s)	253, 698
SfaNI	GCATC	1 cut(s)	322
SfoI	GGCGCC	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	2 cut(s)	118, 134
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	3 cut(s)	45, 320, 698
SsiI	CCGC	3 cut(s)	159, 169, 195
SspDI	GGCGCC	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	433, 514, 682
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	221, 381, 532
TasI	AATT	3 cut(s)	45, 320, 698
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	256, 514
TseI	GCWGC	3 cut(s)	402, 410, 671
Tsp45I	GTSAC	2 cut(s)	256, 514
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	270, 666
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	2 cut(s)	118, 134
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	320, 698
XceI	RCATGY	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.