Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

9619469 .. 9621169

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1112200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCAGCTCCATTTCTCTCCGCTCCCACCCACTCTGTTTCTCTCTCTCCCTCTCCCCCTATTTAGTCAGATCATGAAAACTTTCGACTTCCCATCTCTCTTCTTCCTTCCCCAAATCTTCAACCCCTTCTCTTTCTGCAGCCCAAAATCCATGGCCTCCTTCAAGCCCTCCATTCCTCCCACCAGCGACTCTTCTACCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGACAAAACCACCGCACTACTCCGCCGGATCAAGTCGGAGGGAAACAGCGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATACGAGATACGCCATCGATTCGGTTGTGACTCATGATGGGGTGAAGTTTCCGTGCTGGGCACTGCCTAATCTGTCGTCGTTTCGGCAGAATTTTGGTGGAGAAGCTTATGACAAGCTTGATGTTATTGGTATCGATGAGGCTCAGTTTTTTGAAGATCTGTACGATTTCTGCTGCACGGCTGCTGATCACGATGGAAAAACTGTAATTGTTGCAGGCTTGGATGGTGATTACTTGAGGAGGAGCTTTGGCTCGGTGCTTGACATAATACCACTTGCTGATTCTGTGACCAAGTTGACGGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACTAGGACAGAACTGATTGGCGGTGCTGATGTCTACATGCCTGTGTGTCGCCAACATTATGTCAACGGACAACTTCTCATTAAAACTGCAAGAAGTGTAGTGGAGTCCCATAAATTTAAGTGTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

269

Amino Acids

29.84

Weight (kDa)

7.57

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	68 - 245	2.2e-52	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	5 cut(s)	20, 249, 259, 285, 696
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	409, 788
AfaI	GTAC	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	121, 163, 473
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	5 cut(s)	7, 425, 436, 564, 647
AluI	AGCT	5 cut(s)	7, 425, 436, 564, 647
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	4, 138, 492, 500
ApoI	RAATTY	2 cut(s)	409, 788
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	208, 224
AsuHPI	GGTGA	2 cut(s)	373, 557
AvaII	GGWCC	2 cut(s)	208, 224
AxyI	CCTNAGG	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	4 cut(s)	16, 150, 479, 487
BccI	CCATC	5 cut(s)	100, 341, 350, 506, 536
BceAI	ACGGC	2 cut(s)	513, 633
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	5 cut(s)	5, 139, 286, 493, 501
BlsI	GCNGC	5 cut(s)	6, 140, 287, 494, 502
Bme18I	GGWCC	2 cut(s)	208, 224
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	208, 224
BmiI	GGNNCC	2 cut(s)	225, 226
BpiI	GAAGAC	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	574
Bsa29I	ATCGAT	2 cut(s)	336, 453
BsaJI	CCNNGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	659
BseCI	ATCGAT	2 cut(s)	336, 453
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	476, 650
BseRI	GAGGAG	3 cut(s)	571, 574, 686
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	4 cut(s)	16, 150, 479, 487
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	155
BshVI	ATCGAT	2 cut(s)	336, 453
BsiSI	CCGG	2 cut(s)	201, 262
BslFI	GGGAC	2 cut(s)	210, 766
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	2 cut(s)	210, 766
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	69, 264, 475, 505
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	5 cut(s)	20, 249, 259, 285, 696
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	475, 651
BspDI	ATCGAT	2 cut(s)	336, 453
BspHI	TCATGA	2 cut(s)	72, 352
BspLI	GGNNCC	2 cut(s)	225, 226
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	69, 264, 475, 505
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	104, 196
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	2 cut(s)	462, 659
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	4 cut(s)	72, 267, 478, 508
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	4 cut(s)	69, 264, 475, 505
BstNSI	RCATGY	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	16, 150, 479, 487
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
Bsu15I	ATCGAT	2 cut(s)	336, 453
Bsu36I	CCTNAGG	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	2 cut(s)	336, 453
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	2 cut(s)	72, 352
Cfr13I	GGNCC	2 cut(s)	208, 224
ClaI	ATCGAT	2 cut(s)	336, 453
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	6 cut(s)	73, 151, 220, 229, 353, 712
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	462, 659
DpnI	GATC	4 cut(s)	71, 266, 477, 507
DpnII	GATC	4 cut(s)	69, 264, 475, 505
Eam1104I	CTCTTC	2 cut(s)	104, 196
EarI	CTCTTC	2 cut(s)	104, 196
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	208, 224
Eco81I	CCTNAGG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	6 cut(s)	76, 154, 223, 232, 356, 715
FaqI	GGGAC	2 cut(s)	210, 766
FatI	CATG	6 cut(s)	72, 150, 219, 228, 352, 711
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	5 cut(s)	5, 139, 286, 493, 501
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	5, 139, 286, 493, 501
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	5 cut(s)	5, 139, 286, 493, 501
GsaI	CCCAGC	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	201, 262
Hin1II	CATG	6 cut(s)	76, 154, 223, 232, 356, 715
HincII	GTYRAC	2 cut(s)	615, 739
HindII	GTYRAC	2 cut(s)	615, 739
HindIII	AAGCTT	2 cut(s)	423, 434
HinfI	GANTC	5 cut(s)	188, 338, 349, 599, 779
HpaII	CCGG	2 cut(s)	201, 262
HphI	GGTGA	2 cut(s)	373, 557
Hpy166II	GTNNAC	4 cut(s)	211, 615, 709, 739
Hpy188I	TCNGA	2 cut(s)	69, 274
Hpy188III	TCNNGA	3 cut(s)	73, 353, 509
Hpy8I	GTNNAC	4 cut(s)	211, 615, 709, 739
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	116, 136, 169
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	4, 138, 495, 533, 764
HpyF3I	CTNAG	2 cut(s)	462, 659
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	76, 154, 223, 232, 356, 715
KflI	GGGWCCC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	69, 264, 475, 505
LmnI	GCTCC	3 cut(s)	12, 27, 561
LpnPI	CCDG	8 cut(s)	196, 214, 274, 275, 361, 519, 671, 729
Lsp1109I	GCAGC	4 cut(s)	16, 150, 479, 487
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	346, 604
MalI	GATC	4 cut(s)	71, 266, 477, 507
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	4 cut(s)	69, 264, 475, 505
MboII	GAAGA	6 cut(s)	91, 94, 109, 183, 485, 676
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	3 cut(s)	409, 525, 788
MlyI	GAGTC	3 cut(s)	182, 343, 788
MmeI	TCCRAC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	756, 792
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	2 cut(s)	201, 262
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	69, 264, 475, 505
NlaIII	CATG	6 cut(s)	76, 154, 223, 232, 356, 715
NlaIV	GGNNCC	2 cut(s)	225, 226
NmuCI	GTSAC	2 cut(s)	346, 604
NspI	RCATGY	1 cut(s)	715
PagI	TCATGA	2 cut(s)	72, 352
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	338, 599
PkrI	GCNGC	5 cut(s)	6, 140, 287, 494, 502
PleI	GAGTC	3 cut(s)	182, 343, 787
PpsI	GAGTC	3 cut(s)	182, 343, 787
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	225, 226
PspPI	GGNCC	2 cut(s)	208, 224
PspPPI	RGGWCCY	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	2 cut(s)	756, 792
SatI	GCNGC	5 cut(s)	5, 139, 286, 493, 501
Sau3AI	GATC	4 cut(s)	69, 264, 475, 505
Sau96I	GGNCC	2 cut(s)	208, 224
SchI	GAGTC	3 cut(s)	182, 343, 788
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	9, 200, 210, 216, 427, 438, 566, 649
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	208, 224
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	3 cut(s)	409, 525, 788
SsiI	CCGC	5 cut(s)	20, 249, 259, 285, 696
SspMI	CTAG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	84, 311, 336, 453, 622
TasI	AATT	3 cut(s)	409, 525, 788
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	338, 599
Tru1I	TTAA	2 cut(s)	756, 792
Tru9I	TTAA	2 cut(s)	756, 792
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	2 cut(s)	346, 604
TseI	GCWGC	4 cut(s)	4, 138, 492, 500
Tsp45I	GTSAC	2 cut(s)	346, 604
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	3 cut(s)	360, 683, 756
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	208, 224
XapI	RAATTY	2 cut(s)	409, 788
XceI	RCATGY	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.