Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

3036611 .. 3038502

Gene Structure 1892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGATCTTCTTCTGGGCAAAGTGGGTATGATCTATCTTTCAAGATCTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGCTTCATTTCCAGCTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGACTTTAAGATCAAACAGATGAAAGTAAGAGGGAAAAGGCTGAAACTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGAACATTGACAAGTTCTTATTTCAGAGGCTCCCAAGGAATCATTCTCGTTTATGATGTCACGAAAAGAGAGACATTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAGCTATATTCGACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTTGATAGAGAATCAGAAAGGAAGGTTAGCCGGGAAGAAGGAATGGCTCTAGCGAAAGACCTCAATTGTTTGTTTCATGAATGTAGCGCAAGAACCCGAGAAAACGTGAACGGATGCTTCGAAGAGCTAGCTTTGAAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCTCTGTGAAGAGAAAACCGGATTACCGAGCTCATCAAGGCCGGTGTTGCAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

205

Amino Acids

22.9

Weight (kDa)

8.48

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	11 - 172	4e-18	ADP-ribosylation factor family
Ras	PF00071	15 - 176	9.8e-55	Ras family
Roc	PF08477	15 - 130	2.8e-30	Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA	PF04670	15 - 136	1.8e-07	Gtr1/RagA G protein conserved region
MMR_HSR1	PF01926	15 - 98	3.5e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	532
AclWI	GGATC	2 cut(s)	13, 562
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	43, 304, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	13, 562
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	2 cut(s)	81, 609
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	504
AsuNHI	GCTAGC	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	3 cut(s)	434, 512, 537
BglII	AGATCT	2 cut(s)	45, 118
BisI	GCNGC	2 cut(s)	82, 610
BlsI	GCNGC	2 cut(s)	83, 611
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	253, 534
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	357, 488
BmtI	GCTAGC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	415, 578, 601
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	480
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	253, 534
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	13, 562
BspQI	GCTCTTC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	501, 563
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	86, 513
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	6 cut(s)	8, 34, 48, 121, 153, 557
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	3 cut(s)	5, 45, 118
BstYI	RGATCY	3 cut(s)	5, 45, 118
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	86, 513
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	2 cut(s)	353, 461
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	6 cut(s)	7, 33, 47, 120, 152, 556
DpnII	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
Eam1104I	CTCTTC	2 cut(s)	501, 563
EarI	CTCTTC	2 cut(s)	501, 563
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	356, 464
FaiI	YATR	5 cut(s)	30, 276, 340, 354, 462
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	352, 460
Fnu4HI	GCNGC	2 cut(s)	82, 610
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	82, 610
FspBI	CTAG	3 cut(s)	434, 512, 537
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	2 cut(s)	82, 610
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	3 cut(s)	415, 578, 601
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	356, 464
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	62, 261, 395
HpaII	CCGG	3 cut(s)	415, 578, 601
Hpy166II	GTNNAC	2 cut(s)	142, 493
Hpy188I	TCNGA	3 cut(s)	224, 248, 400
Hpy188III	TCNNGA	4 cut(s)	43, 283, 461, 615
Hpy8I	GTNNAC	2 cut(s)	142, 493
HpyAV	CCTTC	3 cut(s)	400, 416, 545
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	360, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	606
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	356, 464
HspAI	GCGC	1 cut(s)	471
KpnI	GGTACC	1 cut(s)	536
Kzo9I	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	2 cut(s)	130, 257
LpnPI	CCDG	7 cut(s)	51, 118, 181, 192, 428, 591, 614
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	2 cut(s)	357, 488
MaeI	CTAG	3 cut(s)	434, 512, 537
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	6 cut(s)	7, 33, 47, 120, 152, 556
MboI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
MboII	GAAGA	7 cut(s)	3, 128, 431, 518, 532, 560, 580
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	3 cut(s)	5, 45, 118
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	1 cut(s)	448
MnlI	CCTC	4 cut(s)	164, 242, 455, 523
MseI	TTAA	2 cut(s)	147, 363
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	415, 578, 601
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	448
MwoI	GCNNNNNNNGC	1 cut(s)	606
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	2 cut(s)	356, 464
NlaIV	GGNNCC	2 cut(s)	253, 534
NmuCI	GTSAC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	504
PagI	TCATGA	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	62, 261, 395
PkrI	GCNGC	2 cut(s)	83, 611
Psp124BI	GAGCTC	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	253, 534
PsuI	RGATCY	3 cut(s)	5, 45, 118
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	147, 363
SatI	GCNGC	2 cut(s)	82, 610
Sau3AI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	2 cut(s)	357, 488
SfuI	TTCGAA	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	448
SspMI	CTAG	3 cut(s)	434, 512, 537
SstI	GAGCTC	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	114, 344, 504
TasI	AATT	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	62, 261, 395
Tru1I	TTAA	2 cut(s)	147, 363
Tru9I	TTAA	2 cut(s)	147, 363
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	81, 609
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	88, 176, 449, 477
TspGWI	ACGGA	1 cut(s)	510
XspI	CTAG	3 cut(s)	434, 512, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.