Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

32876294 .. 32879498

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTTCTTCAGGGCAGAGCAGCAACTACGATCTGTCGTTCAAGATCTTGCTGATCGGAGACTCTGCAGTTGGCAAAAGTAGTCTTCTTGTCAGCTTCATCTCCAACTCTGTCGACGATCTTGCTCCCACCATTGGTGTGGATTTTAAAATTAAGGTGCTTACTGTTGGTGGGAAGAGAATTAAGATGACAATTTGGGATACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTATAGAAGTGCCCAAGGAATCATTCTCGTGTATGATGTGACTCGGAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAACTGTACTCAACTAATCAGGACTGTGTCAAGGTGCTTGTCGGGAATAAAGTTGACAGAGAATCTGAGAGGGCTGTGAGTAGAGAAGAGGGCATTGCTCTTGCAAAAGATATTGGATGCATGTTTCTTGAATGTAGCGCTAAGACTAGAGAAAATGTGGAGCGTTGCTTTCAAGAGCTAGCATTAAAGATAATGGAGATTCCTAGCCTCTTAGAAGAGGGTTCTACTGTAGCAAAGAGAAACATTTTGAAGCAGAAACAAGAAAATCAAGCACCTCCTAGTTGTTGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

6.4

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	11 - 172	1.1e-18	ADP-ribosylation factor family
Ras	PF00071	15 - 176	1.4e-56	Ras family
Roc	PF08477	15 - 130	8.5e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	43, 464, 506, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	4 cut(s)	96, 206, 237, 511
AluI	AGCT	4 cut(s)	96, 206, 237, 511
Alw26I	GTCTC	2 cut(s)	54, 285
Aor51HI	AGCGCT	1 cut(s)	472
ApeKI	GCWGC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	54, 285
BfaI	CTAG	4 cut(s)	480, 512, 537, 612
BfmI	CTRYAG	3 cut(s)	66, 244, 561
BfoI	RGCGCY	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
BmsI	GCATC	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	54, 285
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	31, 45, 54, 118
BspCNI	CTCAG	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	31, 45, 54, 118
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	4 cut(s)	166, 339, 359, 562
Bst6I	CTCTTC	3 cut(s)	170, 414, 543
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	399, 474, 544
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	4 cut(s)	34, 48, 57, 121
BstMAI	GTCTC	2 cut(s)	54, 285
BstMBI	GATC	4 cut(s)	31, 45, 54, 118
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	3 cut(s)	66, 244, 561
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	7 cut(s)	96, 206, 237, 323, 407, 511, 540
CviKI_1	RGCY	7 cut(s)	96, 206, 237, 323, 407, 511, 540
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	399, 474, 544
DpnI	GATC	4 cut(s)	33, 47, 56, 120
DpnII	GATC	4 cut(s)	31, 45, 54, 118
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	170, 414, 543
EarI	CTCTTC	3 cut(s)	170, 414, 543
Eco130I	CCWWGG	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	246, 276, 319, 455
FatI	CATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	4 cut(s)	480, 512, 537, 612
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	474
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	115, 388
HindII	GTYRAC	2 cut(s)	115, 388
HinfI	GANTC	5 cut(s)	62, 261, 283, 395, 532
Hpy166II	GTNNAC	2 cut(s)	115, 388
Hpy188I	TCNGA	5 cut(s)	59, 224, 288, 313, 400
Hpy188III	TCNNGA	5 cut(s)	43, 353, 376, 461, 506
Hpy8I	GTNNAC	2 cut(s)	115, 388
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	4 cut(s)	166, 339, 359, 562
HpyCH4V	TGCA	3 cut(s)	68, 437, 453
HpyF3I	CTNAG	3 cut(s)	399, 474, 544
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	31, 45, 54, 118
LmnI	GCTCC	2 cut(s)	130, 493
LpnPI	CCDG	3 cut(s)	192, 197, 338
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	4 cut(s)	480, 512, 537, 612
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	33, 47, 56, 120
MboI	GATC	4 cut(s)	31, 45, 54, 118
MboII	GAAGA	4 cut(s)	77, 187, 431, 560
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	3 cut(s)	150, 180, 192
MlyI	GAGTC	2 cut(s)	56, 277
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	210, 396, 415, 544, 551, 618
Mph1103I	ATGCAT	1 cut(s)	455
MseI	TTAA	5 cut(s)	147, 153, 183, 230, 518
MslI	CAYNNNNRTG	2 cut(s)	137, 269
MspA1I	CMGCKG	1 cut(s)	206
NdeII	GATC	4 cut(s)	31, 45, 54, 118
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	261, 395, 532
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	2 cut(s)	56, 277
PpsI	GAGTC	2 cut(s)	56, 277
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	137, 269
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	5 cut(s)	147, 153, 183, 230, 518
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	4 cut(s)	31, 45, 54, 118
SchI	GAGTC	2 cut(s)	56, 277
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	98, 159, 208, 221, 239, 299, 369, 513, 610
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	3 cut(s)	66, 244, 561
SmiMI	CAYNNNNRTG	2 cut(s)	137, 269
Sse9I	AATT	3 cut(s)	150, 180, 192
SspMI	CTAG	4 cut(s)	480, 512, 537, 612
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	4 cut(s)	166, 339, 359, 562
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	150, 180, 192
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	261, 395, 532
Tru1I	TTAA	5 cut(s)	147, 153, 183, 230, 518
Tru9I	TTAA	5 cut(s)	147, 153, 183, 230, 518
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	359
XceI	RCATGY	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	4 cut(s)	480, 512, 537, 612
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.