Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

40896539 .. 40899823

Gene Structure 3285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0292900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTAGCATTAATCAGATAGCATTGGGTTGCGGAATAGCTACAGTGAGACTTCCAATGGCGAAACCATCGTGGGCCGTCGTCAGAGCCGAGCTTCCCAAAGCCCCTGATCTCTATGCTGAGCGCTCTGTTTCCATAAGTGGGTCTTCCTCCTCTCGCCGGCGTGATCTCGTTTTCGTCGTCAATCCTTCAGGGGCTAATGGGAGGACTGGTAAGGAGTGGAAGAAGCTGCTTCCGTATTTGAGGTCTCGTCTTGGTGCTGATTGCAATATATGCGAGTCTTTAACATCAGGTCCTTCTCATGCAATCGACATAACACGGGAGGCTATACGGGAGGGTGCAGATGCTGTAATCGTGGTGGGAGGAGATGGGACTTTGCATGAGGTTGTGAATGGATTCTTTTGGGCCGGAAAACCTGTTACTAATTACGATAGAGAGGCCACCCATTCAACTGCCCTCGGTCTCATTCCGTTGGGAACTGGGTCCGATTTTGCCAGATCATTTGGCTGGAAAAATAATCCTTATGAAGCCATCGAACGCATAGCCAAAGGACAGAGATCACGGATAGATGTTGGAGTTATTAGTGGAGAAACTGAAGAACCTCATTACTTTATTAATGTTGCTGACATTCACTTGAGTGCAAAAGCAGGATACCATGCTTCTAAGTACAAGAGATTCGGAAACTTGTGCTATGTTATTGGTGCTTTGAAAGGCTTTATTGGGCACCGTAATCAGGACCTTAAGATCAAGGTCAATGAAGGGGAATGGGAAGTATATCCTCAAGTAACAGCCCTTTGCATTGGAAATGCAAAATACTTTGGTGGTGGTATGAAAATTACACCAAATGCTGATCCTCAGAATGGAAAATTTGAGGTTGTGATTCTTCAGGATTTCAAGTGGTATGACTTTGTCTTGAAGCTACACAAGCTGTACAATGGGACCCATCTATCGGTGGAAAATGTATCTTCAAGAAGCGTACATTCTATTGAAGTGGAGGAGATTTCAGGAAGTGGCAGCATTTATGTTCAATCAGATGGCGAACATTTAGGATTCCTGCCTAGGAAGTTTTGTATATTACCTTCTGCTGTCGAGATGATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

367

Amino Acids

40.13

Weight (kDa)

8.36

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	57 - 193	1.4e-28	Diacylglycerol kinase catalytic domain
YegS_C	PF19279	214 - 366	4.8e-25	YegS C-terminal NAD kinase beta sandwich-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	845
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	3 cut(s)	174, 615, 869
AfaI	GTAC	3 cut(s)	668, 932, 978
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	141, 159, 733, 860, 949
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	450, 709, 895, 916, 969, 989, 1028
AleI	CACNNNNGTG	1 cut(s)	636
AluBI	AGCT	5 cut(s)	41, 94, 229, 919, 928
AluI	AGCT	5 cut(s)	41, 94, 229, 919, 928
Alw26I	GTCTC	3 cut(s)	43, 252, 467
AlwI	GGATC	1 cut(s)	845
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	3 cut(s)	75, 405, 438
ApeKI	GCWGC	2 cut(s)	229, 1014
ApoI	RAATTY	1 cut(s)	866
AseI	ATTAAT	2 cut(s)	12, 615
Asp700I	GAANNNNTTC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	1058
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	6 cut(s)	75, 293, 405, 483, 736, 939
AvaII	GGWCC	4 cut(s)	293, 483, 736, 939
AvrII	CCTAGG	1 cut(s)	1058
BaeGI	GKGCMC	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	1063, 1095
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	216, 1026
BccI	CCATC	5 cut(s)	76, 362, 539, 951, 1028
BceAI	ACGGC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	43, 252, 467
BfaI	CTAG	1 cut(s)	1059
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	2 cut(s)	230, 1015
BlnI	CCTAGG	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	231, 1016
Bme18I	GGWCC	4 cut(s)	293, 483, 736, 939
BmgT120I	GGNCC	6 cut(s)	75, 293, 405, 483, 736, 939
BmiI	GGNNCC	4 cut(s)	484, 725, 940, 941
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	655, 765
BsaI	GGTCTC	2 cut(s)	252, 467
BsaJI	CCNNGG	2 cut(s)	457, 1058
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 159, 733, 860, 949
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	214, 484
BseDI	CCNNGG	2 cut(s)	457, 1058
BseLI	CCNNNNNNNGG	5 cut(s)	141, 159, 733, 860, 949
BseMII	CTCAG	2 cut(s)	111, 869
BseNI	ACTGG	2 cut(s)	214, 484
BseRI	GAGGAG	3 cut(s)	142, 378, 1010
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	216, 1026
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	77, 407, 440
BshNI	GGYRCC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	160, 408
BslFI	GGGAC	2 cut(s)	385, 952
BslI	CCNNNNNNNGG	5 cut(s)	141, 159, 733, 860, 949
BsmAI	GTCTC	3 cut(s)	43, 252, 467
BsmFI	GGGAC	2 cut(s)	385, 952
BsnI	GGCC	3 cut(s)	77, 407, 440
Bso31I	GGTCTC	2 cut(s)	252, 467
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	3 cut(s)	77, 407, 440
BspCNI	CTCAG	2 cut(s)	112, 868
BspLI	GGNNCC	4 cut(s)	484, 725, 940, 941
BspPI	GGATC	1 cut(s)	845
BspT107I	GGYRCC	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	2 cut(s)	252, 467
BsrFI	RCCGGY	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	214, 484
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	457, 1058
BssMI	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
BssT1I	CCWWGG	1 cut(s)	1058
Bst4CI	ACNGT	2 cut(s)	46, 728
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	120, 663, 855
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	6 cut(s)	112, 169, 500, 560, 747, 853
BstMAI	GTCTC	3 cut(s)	43, 252, 467
BstMBI	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 925
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	2 cut(s)	216, 1026
BstV2I	GAAGAC	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	644
BsuRI	GGCC	3 cut(s)	77, 407, 440
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	6 cut(s)	75, 293, 405, 483, 736, 939
Csp6I	GTAC	3 cut(s)	667, 931, 977
CviAII	CATG	3 cut(s)	302, 380, 656
CviQI	GTAC	3 cut(s)	667, 931, 977
DdeI	CTNAG	3 cut(s)	120, 663, 855
DpnI	GATC	6 cut(s)	111, 168, 499, 559, 746, 852
DpnII	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
Eco130I	CCWWGG	1 cut(s)	1058
Eco31I	GGTCTC	2 cut(s)	252, 467
Eco47I	GGWCC	4 cut(s)	293, 483, 736, 939
Eco47III	AGCGCT	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	174, 615, 869
EcoO109I	RGGNCCY	3 cut(s)	293, 736, 939
EcoT14I	CCWWGG	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	1058
FaeI	CATG	3 cut(s)	305, 383, 659
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	385, 952
FatI	CATG	3 cut(s)	301, 379, 655
Fnu4HI	GCNGC	2 cut(s)	230, 1015
Fsp4HI	GCNGC	2 cut(s)	230, 1015
FspBI	CTAG	1 cut(s)	1059
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	230, 1015
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	77, 407, 440
HapII	CCGG	2 cut(s)	160, 408
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	305, 383, 659
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	5 cut(s)	278, 396, 675, 880, 1050
HpaII	CCGG	2 cut(s)	160, 408
Hpy188I	TCNGA	6 cut(s)	18, 86, 487, 680, 858, 1033
Hpy188III	TCNNGA	6 cut(s)	734, 887, 913, 969, 1005, 1090
Hpy99I	CGWCG	2 cut(s)	83, 182
HpyAV	CCTTC	4 cut(s)	198, 306, 752, 1089
HpyCH4III	ACNGT	2 cut(s)	46, 728
HpyCH4V	TGCA	7 cut(s)	267, 305, 341, 379, 641, 798, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 925
HpyF3I	CTNAG	3 cut(s)	120, 663, 855
Hsp92II	CATG	3 cut(s)	305, 383, 659
HspAI	GCGC	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	939
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
Lsp1109I	GCAGC	2 cut(s)	216, 1026
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	1059
MaeIII	GTNAC	2 cut(s)	418, 784
MalI	GATC	6 cut(s)	111, 168, 499, 559, 746, 852
MboI	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
MboII	GAAGA	5 cut(s)	138, 235, 608, 875, 957
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	3 cut(s)	424, 834, 866
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	553
MreI	CGCCGGCG	1 cut(s)	159
MroNI	GCCGGC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	4 cut(s)	12, 284, 615, 741
MslI	CAYNNNNRTG	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	2 cut(s)	160, 408
MwoI	GCNNNNNNNGC	2 cut(s)	273, 925
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	3 cut(s)	305, 383, 659
NlaIV	GGNNCC	4 cut(s)	484, 725, 940, 941
NmeAIII	GCCGAG	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 177
PdiI	GCCGGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	396, 675, 880, 1050
PflFI	GACNNNGTC	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	231, 1016
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	3 cut(s)	293, 736, 939
PshBI	ATTAAT	2 cut(s)	12, 615
Psp5II	RGGWCCY	3 cut(s)	293, 736, 939
PspN4I	GGNNCC	4 cut(s)	484, 725, 940, 941
PspPI	GGNCC	6 cut(s)	75, 293, 405, 483, 736, 939
PspPPI	RGGWCCY	3 cut(s)	293, 736, 939
PstNI	CAGNNNCTG	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	908
RsaI	GTAC	3 cut(s)	668, 932, 978
RsaNI	GTAC	3 cut(s)	667, 931, 977
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	12, 284, 615, 741
SatI	GCNGC	2 cut(s)	230, 1015
Sau3AI	GATC	6 cut(s)	109, 166, 497, 557, 744, 850
Sau96I	GGNCC	6 cut(s)	75, 293, 405, 483, 736, 939
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	726
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	159
SinI	GGWCC	4 cut(s)	293, 483, 736, 939
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	634, 740, 780
SmoI	CTYRAG	3 cut(s)	634, 740, 780
Sse9I	AATT	3 cut(s)	424, 834, 866
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	1059
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	2 cut(s)	46, 728
TaqI	TCGA	3 cut(s)	309, 534, 1089
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	3 cut(s)	424, 834, 866
TatI	WGTACW	2 cut(s)	666, 930
TfiI	GAWTC	4 cut(s)	396, 675, 880, 1050
Tru1I	TTAA	4 cut(s)	12, 284, 615, 741
Tru9I	TTAA	4 cut(s)	12, 284, 615, 741
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	229, 1014
TspDTI	ATGAA	3 cut(s)	540, 771, 845
TspGWI	ACGGA	3 cut(s)	225, 459, 577
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	908
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	4 cut(s)	293, 483, 736, 939
VspI	ATTAAT	2 cut(s)	12, 615
XapI	RAATTY	1 cut(s)	866
XmaJI	CCTAGG	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.