Rw1G027000

Ras-related protein RABC2a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002293
Physical Location & Seq
Forward (+)
54340695 .. 54341304
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027000.1

Sequence Viewer

Length: 357 bp
ATGGCAAATCAAAATCGGTCTGATTTCTCATTTGATTTCAATCACAGTGAAGTAGACCGGTACTCCACCAATCAAGATTGCATTAAAATTCTAGTCGGGAACAAAGTTGACAGGGATAAAGAGAGGGTTGTAACCAGAGAAGAAGGGATGGCACTTGCACAGGAGCATAAATGTTTGTTTCTTGAATGTAGTGCTAAAACTAAAGAAAATGTTCAGCAATGCTTTAAAGATCTCACATTGAAGATGCTGGAGGTACCAAGTTTACTGGAAAGTGGATCTGTGGACGTGAAGAGACAAATTTTGAAGCAGAAAGAAGCAGACCAGATGCCTTGCAGCGGCAATTGCTGCTCTCAATAG

Protein Analysis

118

Amino Acids

13.48

Weight (kDa)

5.7

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 16 - 82 5.8e-16 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 87, 297
AfaI GTAC 2 cut(s) 62, 255
AfiI CCNNNNNNNGG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 4 cut(s) 40, 185, 241, 304
AjiI CACGTC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 333, 345
ApoI RAATTY 2 cut(s) 87, 297
AsiGI ACCGGT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 332, 345
BccI CCATC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 92
BglII AGATCT 1 cut(s) 229
BisI GCNGC 3 cut(s) 334, 337, 346
BlsI GCNGC 3 cut(s) 335, 338, 347
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 2 cut(s) 234, 315
BpmI CTGGAG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 332, 345
BshNI GGYRCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 229, 275
BspACI CCGC 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 57
BssMI GATC 2 cut(s) 229, 275
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 345
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 232, 278
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 229, 275
BstMWI GCNNNNNNNGC 2 cut(s) 342, 345
BstV1I GCAGC 2 cut(s) 332, 345
BstX2I RGATCY 2 cut(s) 229, 275
BstYI RGATCY 2 cut(s) 229, 275
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 2 cut(s) 61, 254
CspAI ACCGGT 1 cut(s) 57
CviQI GTAC 2 cut(s) 61, 254
DpnI GATC 2 cut(s) 231, 277
DpnII GATC 2 cut(s) 229, 275
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
FaiI YATR 1 cut(s) 168
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 334, 337, 346
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 334, 337, 346
FspBI CTAG 1 cut(s) 92
GluI GCNGC 3 cut(s) 334, 337, 346
GsuI CTGGAG 1 cut(s) 269
HapII CCGG 1 cut(s) 58
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 55, 109, 263, 283
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 74, 97, 182
Hpy8I GTNNAC 4 cut(s) 55, 109, 263, 283
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 81, 158, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 345
HpySE526I ACGT 1 cut(s) 285
KpnI GGTACC 1 cut(s) 257
Kzo9I GATC 2 cut(s) 229, 275
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 7 cut(s) 71, 97, 146, 148, 233, 251, 335
Lsp1109I GCAGC 2 cut(s) 332, 345
LweI GCATC 2 cut(s) 234, 315
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 130
MalI GATC 2 cut(s) 231, 277
MboI GATC 2 cut(s) 229, 275
MboII GAAGA 3 cut(s) 152, 253, 301
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 229, 275
MluCI AATT 3 cut(s) 87, 297, 340
MnlI CCTC 2 cut(s) 117, 244
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 2 cut(s) 84, 225
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 342, 345
NdeII GATC 2 cut(s) 229, 275
NlaIV GGNNCC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 3 cut(s) 335, 338, 347
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 2 cut(s) 229, 275
RsaI GTAC 2 cut(s) 62, 255
RsaNI GTAC 2 cut(s) 61, 254
SaqAI TTAA 2 cut(s) 84, 225
SatI GCNGC 3 cut(s) 334, 337, 346
Sau3AI GATC 2 cut(s) 229, 275
SetI ASST 2 cut(s) 255, 288
SfaNI GCATC 2 cut(s) 234, 315
Sse9I AATT 3 cut(s) 87, 297, 340
SsiI CCGC 1 cut(s) 336
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 288
TaqII GACCGA 1 cut(s) 6
TasI AATT 3 cut(s) 87, 297, 340
TauI GCSGC 1 cut(s) 339
Tru1I TTAA 2 cut(s) 84, 225
Tru9I TTAA 2 cut(s) 84, 225
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 333, 345
TspRI CASTG 1 cut(s) 52
XapI RAATTY 2 cut(s) 87, 297
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.