Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

14738301 .. 14741600

Gene Structure 3300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTTCTTCAGGGCAGAGCAGTAACTACGATCTGTCATTCAAGATCTTGTTGATCGGAGACTCTGCCGTCGGCAAAAGCAGTCTTCTTGTTAGCTTCATCTCCAACTCTGTTGACGATCTTGCCCCCACCATTGGTGTGGATTTTAAAATCAAGCTGCTCACTGTAGCTGAGAAGAGAATTAAGATGACAATTTGGGACACAGCTGGACAAGAGAGGTTCAGAACATTAACAAGCTCTTACTACAGAAATGCACAAGGAATCATTCTTGTGTATGACGTGACTCGGAGAGACACCTTTACCAACTTATCAGACGTATGGGCTAAAGAAGTGGAGCTCTACTCAACTAATAAGGACTGTGCCAAGATGCTTGTTGGAAATAAAGTCGACAGAGAATCTGAAAGGGCTGTAAGTAGAGAAGAGGGGCTTGCTCTTGCAAAAGATCTTGGATGTTTGTTTCTTGAATGTAGCGCTAAAACTAGAGAAAATGTGGAGCAATGCTTCGAAGAGCTAGCATTAAAGATAATGGAAGTTCCTAGTCTCCTGGAAGAAGGTTCAACTGCAGCAAAGAGAAATATTTTGAAGCAGAAACAGGAAAATCAAGCACCTCCTAGCGGCGGTTGTTGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.21

Weight (kDa)

5.45

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	615, 618
AfeI	AGCGCT	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	134, 614, 617
AgsI	TTSAA	4 cut(s)	43, 464, 558, 583
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	7 cut(s)	96, 157, 170, 206, 237, 337, 511
AluI	AGCT	7 cut(s)	96, 157, 170, 206, 237, 337, 511
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	54, 285, 545
Aor51HI	AGCGCT	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	157, 563
AspLEI	GCGC	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	504
AsuNHI	GCTAGC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	144, 575
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	545
BcoDI	GTCTC	3 cut(s)	54, 285, 545
BfaI	CTAG	4 cut(s)	480, 512, 537, 612
BfmI	CTRYAG	3 cut(s)	165, 244, 561
BfoI	RGCGCY	1 cut(s)	474
BglII	AGATCT	2 cut(s)	45, 442
BisI	GCNGC	3 cut(s)	158, 564, 616
BlsI	GCNGC	3 cut(s)	159, 565, 617
Bme1390I	CCNGG	1 cut(s)	545
BmgBI	CACGTC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	357
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu14I	TTCGAA	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 614, 617
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	134, 614, 617
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	144, 575
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	134, 614, 617
BsmAI	GTCTC	3 cut(s)	54, 285, 545
BsmFI	GGGAC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	31, 45, 54, 118, 442
BspACI	CCGC	2 cut(s)	615, 618
BspCNI	CTCAG	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	503
BssMI	GATC	5 cut(s)	31, 45, 54, 118, 442
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	166, 359
Bst6I	CTCTTC	3 cut(s)	170, 414, 501
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	429, 513
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	5 cut(s)	34, 48, 57, 121, 445
BstMAI	GTCTC	3 cut(s)	54, 285, 545
BstMBI	GATC	5 cut(s)	31, 45, 54, 118, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	3 cut(s)	165, 244, 561
BstV1I	GCAGC	2 cut(s)	144, 575
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	45, 442
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	2 cut(s)	45, 442
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	429, 513
CfoI	GCGC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	5 cut(s)	33, 47, 56, 120, 444
DpnII	GATC	5 cut(s)	31, 45, 54, 118, 442
DraI	TTTAAA	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	170, 414, 501
EarI	CTCTTC	3 cut(s)	170, 414, 501
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	339
FaiI	YATR	3 cut(s)	276, 319, 631
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	158, 564, 616
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	3 cut(s)	158, 564, 616
FspBI	CTAG	4 cut(s)	480, 512, 537, 612
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	3 cut(s)	158, 564, 616
HaeII	RGCGCY	1 cut(s)	474
HhaI	GCGC	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	115, 388
HindII	GTYRAC	2 cut(s)	115, 388
HinfI	GANTC	4 cut(s)	62, 261, 283, 395
Hpy166II	GTNNAC	2 cut(s)	115, 388
Hpy188I	TCNGA	5 cut(s)	59, 224, 288, 313, 400
Hpy188III	TCNNGA	2 cut(s)	43, 461
Hpy8I	GTNNAC	2 cut(s)	115, 388
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	166, 359
HpyCH4IV	ACGT	2 cut(s)	279, 315
HpyCH4V	TGCA	3 cut(s)	254, 437, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	279, 315
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	5 cut(s)	31, 45, 54, 118, 442
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	2 cut(s)	334, 493
LpnPI	CCDG	4 cut(s)	192, 530, 557, 578
Lsp1109I	GCAGC	2 cut(s)	144, 575
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	4 cut(s)	480, 512, 537, 612
MaeII	ACGT	2 cut(s)	279, 315
MaeIII	GTNAC	2 cut(s)	23, 280
MalI	GATC	5 cut(s)	33, 47, 56, 120, 444
MboI	GATC	5 cut(s)	31, 45, 54, 118, 442
MboII	GAAGA	5 cut(s)	77, 187, 431, 518, 560
MflI	RGATCY	2 cut(s)	45, 442
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	2 cut(s)	180, 192
MlyI	GAGTC	2 cut(s)	56, 277
MmeI	TCCRAC	2 cut(s)	129, 355
MnlI	CCTC	3 cut(s)	210, 415, 618
MseI	TTAA	4 cut(s)	147, 183, 230, 518
MslI	CAYNNNNRTG	2 cut(s)	137, 269
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	1 cut(s)	624
NdeII	GATC	5 cut(s)	31, 45, 54, 118, 442
NheI	GCTAGC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	261, 395
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	3 cut(s)	159, 565, 617
PleI	GAGTC	2 cut(s)	56, 277
PpsI	GAGTC	2 cut(s)	56, 277
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	45, 442
PvuII	CAGCTG	1 cut(s)	206
RseI	CAYNNNNRTG	2 cut(s)	137, 269
SacI	GAGCTC	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	147, 183, 230, 518
SatI	GCNGC	3 cut(s)	158, 564, 616
Sau3AI	GATC	5 cut(s)	31, 45, 54, 118, 442
SchI	GAGTC	2 cut(s)	56, 277
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	3 cut(s)	165, 244, 561
SfuI	TTCGAA	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	137, 269
Sse9I	AATT	2 cut(s)	180, 192
SsiI	CCGC	2 cut(s)	615, 618
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	4 cut(s)	480, 512, 537, 612
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	166, 359
TaiI	ACGT	2 cut(s)	282, 318
TaqI	TCGA	2 cut(s)	387, 504
TasI	AATT	2 cut(s)	180, 192
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	261, 395
Tru1I	TTAA	4 cut(s)	147, 183, 230, 518
Tru9I	TTAA	4 cut(s)	147, 183, 230, 518
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	157, 563
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	4 cut(s)	480, 512, 537, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.