Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

15314816 .. 15316956

Gene Structure 2141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATGAAGGGTTCACCAAGAAATTATGATTACTCATTCAAGATTTTGCTGGCTGGTGATTCTGGTGTTGGAAAGAGCAGTCTTCTTTTGAGTTTCATCTCCGACTTTGTTCATGACCTTTCTCCTACAATTGGTGTGGATTTCAAGATCAAACAGCTTTCAGTTGATGGGAAGAGATTGAAGCTAACAATTTGGGACACAGCTGGACAGGAGAGGTTTGGAACAGTAATAAGCTCTTACTACAGAGGTGCACATGGAATCATTCTCGTGTATGATGTAACACGGCGAGAAACCTTTACAAATTTATCAAATCTATGGGCAAAGGAAGTCGACCGGTACTCCACCAATCAAGAATGCATCAAAATTCTAGTCGGGAACAAAGTTGACAGAGATAAAGAGAGGGTTGTAACCATAGAAGAAGGGATGGCACTTGCACAGGAGCACAAGTGTTTGTTTCTTGAATGTAGCGCTAAAACGAAAGAAAATGTTCAGCAATGCTTTAAAGATCTTACATTGAAGATGCTGGAGGTACCAAGTTTACTGGAAAGTGGATCTGTGGACGTGAAGAGACAAATTTTGCAGCAGAAACAACTAGACCAAGACCAGATGCCTTGTAGCGGCACTTGTTGCACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

213

Amino Acids

23.94

Weight (kDa)

7.54

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	10 - 171	4.8e-16	ADP-ribosylation factor family
Ras	PF00071	14 - 174	7.5e-56	Ras family
Roc	PF08477	14 - 129	3.3e-30	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	46 - 170	3.3e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	3 cut(s)	301, 363, 573
AfaI	GTAC	2 cut(s)	338, 531
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	131, 617
AgeI	ACCGGT	1 cut(s)	333
AgsI	TTSAA	5 cut(s)	40, 145, 181, 461, 517
AjiI	CACGTC	1 cut(s)	562
AluBI	AGCT	4 cut(s)	157, 184, 203, 234
AluI	AGCT	4 cut(s)	157, 184, 203, 234
Alw21I	GWGCWC	2 cut(s)	253, 444
Alw26I	GTCTC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	469
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	3 cut(s)	301, 363, 573
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AsiGI	ACCGGT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	486
Asp718I	GGTACC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	6, 68
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	253, 444
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	2 cut(s)	161, 418
BceAI	ACGGC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	2 cut(s)	368, 593
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	471
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	2 cut(s)	581, 619
BlsI	GCNGC	2 cut(s)	582, 620
BmgBI	CACGTC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	3 cut(s)	366, 510, 597
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 617
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	131, 617
BseMI	GCAATG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	592
Bsh1285I	CGRYCG	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	529
BshTI	ACCGGT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	253, 444
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	131, 617
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	253, 444
Bsp143I	GATC	3 cut(s)	147, 505, 551
BspACI	CCGC	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	333
BssMI	GATC	3 cut(s)	147, 505, 551
BssSI	CACGAG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	167, 560
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	3 cut(s)	150, 508, 554
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	3 cut(s)	147, 505, 551
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	505, 551
BstYI	RGATCY	2 cut(s)	505, 551
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	337, 530
CspAI	ACCGGT	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	2 cut(s)	113, 254
CviJI	RGCY	5 cut(s)	53, 157, 184, 203, 234
CviKI_1	RGCY	5 cut(s)	53, 157, 184, 203, 234
CviQI	GTAC	2 cut(s)	337, 530
DpnI	GATC	3 cut(s)	149, 507, 553
DpnII	GATC	3 cut(s)	147, 505, 551
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	167, 560
EarI	CTCTTC	2 cut(s)	167, 560
Eco47III	AGCGCT	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	359
FaeI	CATG	2 cut(s)	116, 257
FaiI	YATR	6 cut(s)	27, 114, 255, 273, 316, 413
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	112, 253
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	581, 619
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	581, 619
FspBI	CTAG	2 cut(s)	368, 593
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	2 cut(s)	581, 619
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	471
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	116, 257
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	2 cut(s)	331, 385
HindII	GTYRAC	2 cut(s)	331, 385
HinfI	GANTC	2 cut(s)	59, 258
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	6, 68
Hpy166II	GTNNAC	6 cut(s)	14, 251, 331, 385, 539, 559
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	6 cut(s)	40, 113, 145, 350, 373, 458
Hpy8I	GTNNAC	6 cut(s)	14, 251, 331, 385, 539, 559
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	251, 357, 434, 580, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	116, 257
HspAI	GCGC	1 cut(s)	468
KpnI	GGTACC	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	147, 505, 551
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	3 cut(s)	366, 510, 597
MaeI	CTAG	2 cut(s)	368, 593
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	277, 406
MalI	GATC	3 cut(s)	149, 507, 553
MboI	GATC	3 cut(s)	147, 505, 551
MboII	GAAGA	5 cut(s)	74, 184, 428, 529, 577
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	2 cut(s)	505, 551
MhlI	GDGCHC	2 cut(s)	253, 444
MluCI	AATT	6 cut(s)	22, 129, 189, 301, 363, 573
MmeI	TCCRAC	2 cut(s)	49, 126
MnlI	CCTC	4 cut(s)	207, 239, 393, 520
Mph1103I	ATGCAT	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeII	GATC	3 cut(s)	147, 505, 551
NlaIII	CATG	2 cut(s)	116, 257
NlaIV	GGNNCC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	359
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	59, 258
PinAI	ACCGGT	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	582, 620
PspN4I	GGNNCC	1 cut(s)	531
PsuI	RGATCY	2 cut(s)	505, 551
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	338, 531
RsaNI	GTAC	2 cut(s)	337, 530
RseI	CAYNNNNRTG	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	581, 619
Sau3AI	GATC	3 cut(s)	147, 505, 551
SduI	GDGCHC	2 cut(s)	253, 444
SfaNI	GCATC	3 cut(s)	366, 510, 597
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	22, 129, 189, 301, 363, 573
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	2 cut(s)	368, 593
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	330
TasI	AATT	6 cut(s)	22, 129, 189, 301, 363, 573
TauI	GCSGC	1 cut(s)	621
TfiI	GAWTC	2 cut(s)	59, 258
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	1 cut(s)	580
TspDTI	ATGAA	3 cut(s)	20, 85, 101
VneI	GTGCAC	1 cut(s)	249
XapI	RAATTY	3 cut(s)	301, 363, 573
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	368, 593
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.