Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

73771975 .. 73773235

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTCTTGCTCCCATGATTGCAGGTGTGGATTTTAAAATTAAGCTGCTTACTGTTGGTGGGAAGAGAATTAAGATGACAATTTGGGATACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTATAGAAGTGCCCAAGGAATCATTCTCGTGTATGATGTGACTCGGAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAACTATACTCAACTAATCAGGACTGTGTCAAGGTGCTTGTCGGGAATAAAGTTGATAGAGAATCTGAGAGGGCTGTGAGTAGAGAAGAGGGCATTGCTCTTGCAAAAGATATTGGATGCATGTTTCTTGAATGTAGCGCCAAGACTAGAGAAAATGTGAAGCTTTGCTTTCAAGAGCTAGCATTAAAGGTACTTCGAGGGGATCTTGGGAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

8.93

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 138	7.9e-44	Ras family
Roc	PF08477	9 - 93	1.4e-19	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	10 - 134	1.2e-11	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	353, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	5 cut(s)	46, 95, 126, 385, 400
AluI	AGCT	5 cut(s)	46, 95, 126, 385, 400
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	369, 401
BfmI	CTRYAG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	329
BmtI	GCTAGC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	55, 248
Bst6I	CTCTTC	2 cut(s)	59, 303
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	16, 343
CviJI	RGCY	7 cut(s)	46, 95, 126, 212, 296, 385, 400
CviKI_1	RGCY	7 cut(s)	46, 95, 126, 212, 296, 385, 400
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	59, 303
EarI	CTCTTC	2 cut(s)	59, 303
Eco130I	CCWWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	19, 346
FaiI	YATR	6 cut(s)	17, 135, 165, 208, 229, 344
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	2 cut(s)	15, 342
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	369, 401
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	363
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	19, 346
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	150, 172, 284
Hpy188I	TCNGA	4 cut(s)	113, 177, 202, 289
Hpy188III	TCNNGA	4 cut(s)	242, 265, 350, 395
HpyCH4III	ACNGT	2 cut(s)	55, 248
HpyCH4V	TGCA	3 cut(s)	23, 326, 342
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	19, 346
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	9, 81, 86, 227
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	369, 401
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	2 cut(s)	76, 320
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	3 cut(s)	39, 69, 81
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	4 cut(s)	99, 285, 304, 413
Mph1103I	ATGCAT	1 cut(s)	344
MseI	TTAA	5 cut(s)	36, 42, 72, 119, 407
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	95
NdeII	GATC	1 cut(s)	424
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	19, 346
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	150, 284
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	36, 42, 72, 119, 407
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	39, 69, 81
SspMI	CTAG	2 cut(s)	369, 401
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	55, 248
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	39, 69, 81
TfiI	GAWTC	2 cut(s)	150, 284
Tru1I	TTAA	5 cut(s)	36, 42, 72, 119, 407
Tru9I	TTAA	5 cut(s)	36, 42, 72, 119, 407
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	369, 401
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.