pycom07g16160

Ras-related protein RABC2a-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
18579374 .. 18581455
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16160.2

Sequence Viewer

Length: 642 bp
ATGAAGGGTTCTTCACCAAAAGGAGGGAGCCACAATTATGATTACTCGTTCAAGATTTTGCTGACTGGTGATTCTGGTGTTGGAAAGAGCAGCCTTCTCCTCAGCTTCATCTCCACTTTTGTTCAAGACTTGCCTCCCACCATTGGTGTGGATTTTAAGGTCAAGCAGATTTTAGTTGGCGGAAAGAGATTGAAGCTTACAATCTGGGACACAGCTGGACAGGAGAGGTTTGGAACGGTAATAAGCTCTTATTACAGAGGCGCACATGGTATCATTCTTGTGTATGACGTGACACGGCGAGAAACCTTTACAAACTTGTTGAATATCTGGGCGAAGGAAGTAGAGACGTACTCCACTAATCCCGAGTGTATCAAAATTCTAGTAGGGAATAAAGTTGACAGGGAAAACGAGAGGGCTGTAACTCGAGAAGAGGGCATGGCTCTTGCACAGGAGCATAATTGTTTGTTTCTTGAATGCAGTGCGAAAACTAGAGAAAATGTTCAACAATGCTTTAAAGATCTCACACTGAAGATGCTGGAGGTGCCGAGTTTACTAGACAGTGGATCTGTAGAAGTGAAGAGACACATTTTGAAGCAGAAACAAGAAGATCGATTTCCTTGCAATGGTGATTGCTGTTCTTAA

Protein Analysis

214

Amino Acids

23.89

Weight (kDa)

8.12

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 23, 143, 623
AgsI TTSAA 7 cut(s) 52, 125, 193, 322, 473, 503, 592
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 4 cut(s) 105, 196, 215, 246
AluI AGCT 4 cut(s) 105, 196, 215, 246
Alw26I GTCTC 2 cut(s) 338, 574
AlwI GGATC 1 cut(s) 571
Ama87I CYCGRG 2 cut(s) 362, 423
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 6, 80, 638
AvaI CYCGRG 2 cut(s) 362, 423
BanI GGYRCC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BcoDI GTCTC 2 cut(s) 338, 574
BfaI CTAG 3 cut(s) 380, 489, 554
BfmI CTRYAG 1 cut(s) 567
BglII AGATCT 1 cut(s) 517
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 362, 423
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 29, 543
BmsI GCATC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 610
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 143, 623
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 628
BseCI ATCGAT 1 cut(s) 610
BseLI CCNNNNNNNGG 3 cut(s) 23, 143, 623
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 610
BsiHKCI CYCGRG 2 cut(s) 362, 423
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 23, 143, 623
BsmAI GTCTC 2 cut(s) 338, 574
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 362, 423
Bsp143I GATC 3 cut(s) 517, 563, 607
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 29, 543
BspPI GGATC 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 1 cut(s) 70
BssMI GATC 3 cut(s) 517, 563, 607
Bst4CI ACNGT 2 cut(s) 238, 560
Bst6I CTCTTC 2 cut(s) 423, 572
BstDEI CTNAG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 3 cut(s) 520, 566, 610
BstMAI GTCTC 2 cut(s) 338, 574
BstMBI GATC 3 cut(s) 517, 563, 607
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 2 cut(s) 517, 563
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 2 cut(s) 517, 563
Bsu15I ATCGAT 1 cut(s) 610
BsuTUI ATCGAT 1 cut(s) 610
BtrI CACGTC 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 3 cut(s) 484, 524, 565
CfoI GCGC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 610
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 266, 436
CviJI RGCY 8 cut(s) 30, 93, 105, 196, 215, 246, 416, 440
CviKI_1 RGCY 8 cut(s) 30, 93, 105, 196, 215, 246, 416, 440
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 519, 565, 609
DpnII GATC 3 cut(s) 517, 563, 607
DraI TTTAAA 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 423, 572
EarI CTCTTC 2 cut(s) 423, 572
EciI GGCGGA 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 2 cut(s) 362, 423
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 269, 439
FaiI YATR 5 cut(s) 39, 267, 285, 437, 456
FaqI GGGAC 1 cut(s) 221
FatI CATG 2 cut(s) 265, 435
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 3 cut(s) 380, 489, 554
GlaI GCGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 557
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 269, 439
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 71
HphI GGTGA 3 cut(s) 6, 80, 638
Hpy166II GTNNAC 2 cut(s) 397, 551
Hpy188III TCNNGA 5 cut(s) 52, 125, 362, 425, 470
Hpy8I GTNNAC 2 cut(s) 397, 551
HpyAV CCTTC 2 cut(s) 104, 328
HpyCH4III ACNGT 2 cut(s) 238, 560
HpyCH4IV ACGT 2 cut(s) 288, 347
HpyCH4V TGCA 3 cut(s) 446, 477, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 2 cut(s) 288, 347
Hsp92II CATG 2 cut(s) 269, 439
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 517, 563, 607
LmnI GCTCC 2 cut(s) 27, 451
LpnPI CCDG 9 cut(s) 51, 60, 190, 201, 206, 313, 385, 434, 521
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 522
MaeI CTAG 3 cut(s) 380, 489, 554
MaeII ACGT 2 cut(s) 288, 347
MaeIII GTNAC 2 cut(s) 289, 418
MalI GATC 3 cut(s) 519, 565, 609
MboI GATC 3 cut(s) 517, 563, 607
MboII GAAGA 5 cut(s) 3, 440, 541, 589, 617
MflI RGATCY 2 cut(s) 517, 563
MluCI AATT 3 cut(s) 34, 375, 457
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 8 cut(s) 17, 110, 144, 219, 251, 405, 424, 532
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 156, 513, 640
MslI CAYNNNNRTG 3 cut(s) 36, 146, 278
MspA1I CMGCKG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 541
NdeII GATC 3 cut(s) 517, 563, 607
NlaIII CATG 2 cut(s) 269, 439
NlaIV GGNNCC 2 cut(s) 29, 543
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 423
PctI GAATGC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 29, 543
PsuI RGATCY 2 cut(s) 517, 563
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 3 cut(s) 36, 146, 278
SaqAI TTAA 3 cut(s) 156, 513, 640
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 3 cut(s) 517, 563, 607
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmiMI CAYNNNNRTG 3 cut(s) 36, 146, 278
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 3 cut(s) 34, 375, 457
SsiI CCGC 1 cut(s) 180
SspMI CTAG 3 cut(s) 380, 489, 554
TaaI ACNGT 2 cut(s) 238, 560
TaiI ACGT 2 cut(s) 291, 350
TaqI TCGA 2 cut(s) 424, 610
TasI AATT 3 cut(s) 34, 375, 457
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 156, 513, 640
Tru9I TTAA 3 cut(s) 156, 513, 640
TscAI CASTG 3 cut(s) 484, 531, 565
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 17, 97
TspRI CASTG 3 cut(s) 484, 531, 565
XapI RAATTY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 380, 489, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.