Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

9955290 .. 9957413

Gene Structure 2124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGTTCTTCAGGGCAGAGCAGCAGCAACTACGATCTGTCGTTCAAGATCTTGCTGATAGGAGACTCCGCGGTCGGCAAAAGTAGTCTGCTTGTTAGCTTCATCTCCAACTCTGTTGACGATCTTGCCCCCACCATTGGTGTGGATTTTAAAATCAAGCTGCTCACTGTAGCTGGGAAGAAAATCAAGATGACTATTTGGGACACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTACAGAAATGCCCAAGGAATCATCCTTGTGTATGATGTGACTCGGAGAGACACCTTTACGAACTTATCGGAGGTGTGGGCTAAAGAAGTGGAACTGTACTCGACTAACCAGGACTGTGTCAAGATGCTTGTTGGGAATAAAGTTGATAGAGAATCAGAAAGGGCTGTAAGTAGAGAAGAGGGGATTTCTCTTGCAAAAGATCTTGGATGTTTGTTTCTTGAATGTAGCGCTAAAACTCGAGAGAATGTGGAGCACTGCTTCAAAGAGCTAGCGTTGAAGATAATGGAGGTTCCTAGTCTCTTGGAAGAAGGTTCGACCATGGCAAAGAGAAATATATTGAAGCAGAAACAGGAAAATCAAGCACCTCCTATCGGTAGTTGTTGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.38

Weight (kDa)

6.62

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	69, 71
AfaI	GTAC	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	137, 617
AgsI	TTSAA	5 cut(s)	46, 467, 508, 523, 586
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	6 cut(s)	99, 160, 173, 209, 240, 514
AluI	AGCT	6 cut(s)	99, 160, 173, 209, 240, 514
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	3 cut(s)	57, 288, 548
Ama87I	CYCGRG	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	475
ApeKI	GCWGC	3 cut(s)	21, 24, 160
AspLEI	GCGC	1 cut(s)	476
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	33, 36, 147
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	57, 288, 548
BfaI	CTAG	2 cut(s)	515, 540
BfmI	CTRYAG	2 cut(s)	168, 247
BfoI	RGCGCY	1 cut(s)	477
BglII	AGATCT	2 cut(s)	48, 445
BisI	GCNGC	3 cut(s)	22, 25, 161
BlsI	GCNGC	3 cut(s)	23, 26, 162
Bme1390I	CCNGG	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	360
BmtI	GCTAGC	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	69, 259, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 617
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	69, 259, 564
BseGI	GGATG	2 cut(s)	267, 458
BseLI	CCNNNNNNNGG	2 cut(s)	137, 617
BseXI	GCAGC	3 cut(s)	33, 36, 147
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	137, 617
BsmAI	GTCTC	3 cut(s)	57, 288, 548
BsmFI	GGGAC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	34, 48, 121, 445
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	2 cut(s)	69, 71
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	537
BspOI	GCTAGC	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	69, 259, 564
BssMI	GATC	4 cut(s)	34, 48, 121, 445
BssT1I	CCWWGG	2 cut(s)	259, 564
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	169, 342, 362
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	516
BstDSI	CCRYGG	2 cut(s)	69, 564
BstF5I	GGATG	2 cut(s)	267, 458
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	4 cut(s)	37, 51, 124, 448
BstMAI	GTCTC	3 cut(s)	57, 288, 548
BstMBI	GATC	4 cut(s)	34, 48, 121, 445
BstMCI	CGRYCG	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	2 cut(s)	168, 247
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	33, 36, 147
BstX2I	RGATCY	2 cut(s)	48, 445
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	2 cut(s)	48, 445
BtgI	CCRYGG	2 cut(s)	69, 564
BtsCI	GGATG	2 cut(s)	267, 458
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	165, 499
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	476
Cfr42I	CCGCGG	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	565
CviJI	RGCY	8 cut(s)	99, 160, 173, 209, 240, 326, 410, 514
CviKI_1	RGCY	8 cut(s)	99, 160, 173, 209, 240, 326, 410, 514
CviQI	GTAC	1 cut(s)	343
DpnI	GATC	4 cut(s)	36, 50, 123, 447
DpnII	GATC	4 cut(s)	34, 48, 121, 445
DraI	TTTAAA	1 cut(s)	151
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	259, 564
Eco47III	AGCGCT	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	259, 564
ErhI	CCWWGG	2 cut(s)	259, 564
FaeI	CATG	1 cut(s)	568
FaiI	YATR	3 cut(s)	279, 566, 581
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	22, 25, 161
FokI	GGATG	2 cut(s)	254, 465
Fsp4HI	GCNGC	3 cut(s)	22, 25, 161
FspBI	CTAG	2 cut(s)	515, 540
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	3 cut(s)	22, 25, 161
GsaI	CCCAGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	477
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	65, 264, 286, 398
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	227, 291, 316, 403
Hpy188III	TCNNGA	5 cut(s)	46, 187, 367, 464, 485
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	3 cut(s)	169, 342, 362
HpyCH4V	TGCA	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	474
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	34, 48, 121, 445
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	6 cut(s)	159, 195, 200, 341, 368, 581
Lsp1109I	GCAGC	3 cut(s)	33, 36, 147
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	515, 540
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	4 cut(s)	36, 50, 123, 447
MboI	GATC	4 cut(s)	34, 48, 121, 445
MboII	GAAGA	4 cut(s)	190, 434, 535, 563
MflI	RGATCY	2 cut(s)	48, 445
MhlI	GDGCHC	1 cut(s)	501
MlyI	GAGTC	2 cut(s)	59, 280
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	213, 310, 418, 526, 621
MseI	TTAA	2 cut(s)	150, 233
MslI	CAYNNNNRTG	2 cut(s)	140, 272
MspA1I	CMGCKG	2 cut(s)	71, 209
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	4 cut(s)	34, 48, 121, 445
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	264, 398
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	23, 26, 162
PleI	GAGTC	2 cut(s)	59, 280
PpsI	GAGTC	2 cut(s)	59, 280
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	48, 445
PsyI	GACNNNGTC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	140, 272
SacII	CCGCGG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	150, 233
SatI	GCNGC	3 cut(s)	22, 25, 161
Sau3AI	GATC	4 cut(s)	34, 48, 121, 445
SchI	GAGTC	2 cut(s)	59, 280
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	2 cut(s)	168, 247
Sfr274I	CTCGAG	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	2 cut(s)	140, 272
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
SsiI	CCGC	2 cut(s)	69, 71
SspMI	CTAG	2 cut(s)	515, 540
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	259, 564
TaaI	ACNGT	3 cut(s)	169, 342, 362
TaqI	TCGA	3 cut(s)	347, 484, 560
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	264, 398
Tru1I	TTAA	2 cut(s)	150, 233
Tru9I	TTAA	2 cut(s)	150, 233
TscAI	CASTG	2 cut(s)	172, 506
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	21, 24, 160
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	172, 506
Tth111I	GACNNNGTC	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	2 cut(s)	515, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.