Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

24055445 .. 24058171

Gene Structure 2727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAGGGTTCTTCACCAAAAGGAGGGAGCCACAATTATGATTACTCGTTCAAGATTTTGCTGACTGGTGATTCTGGTGTTGGAAAGAGCAGCCTTCTCCTCAGCTTCATCTCCACTTTTGTTCAAGACTTACCTCCCACCGTTGGTGTGGATTTTAAGGTCAAGCAGATTTTAGTTGGCGGAAATAGATTGAAGCTTACAATCTGGGACACAGCGGGACAGGAGAGGTTTGGAACGGTAATAAGCTCTTATTACAGAGGTGCACATGGTATCATTCTTGTGTATGACGTGACACAGCGAGAAACCTTTACAAACTTGTTGAATATCTGGGCGAAGGAAGTAGAGACGTACTCCACTAATCCCGAGTGTATCAAAATTCTAGTAGGGAATAAAGTTGACAGGGAAAACGAGAGGGCTGTAACTCGAGAAGAGGGCATGGCTCTTGCACAGGAGCATAAATGTTTGTTTCTTGAATGCAGTGCGAAAACTAGAGAAAATGTTCAACAATGCTTTAAAGATCTCACACTGAAGATGCTGGAGGTGCCGAGTTTACTAGACAGTGGATCTGTAGAAGTGAAGAGACACATTTTGAAGCAGAAACAAGAAGATCGATTTCCTTGCAATGGTGATTGCTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.85

Weight (kDa)

7.56

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 175	1.1e-14	ADP-ribosylation factor family
Ras	PF00071	18 - 178	5.3e-54	Ras family
Roc	PF08477	18 - 133	4.9e-29	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AciI	CCGC	2 cut(s)	180, 215
AclWI	GGATC	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	23, 143, 623
AgsI	TTSAA	7 cut(s)	52, 125, 193, 322, 473, 503, 592
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	3 cut(s)	105, 196, 246
AluI	AGCT	3 cut(s)	105, 196, 246
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	338, 574
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	2 cut(s)	362, 423
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	498
AsuHPI	GGTGA	3 cut(s)	6, 80, 638
AvaI	CYCGRG	2 cut(s)	362, 423
BaeGI	GKGCMC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	102
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BcoDI	GTCTC	2 cut(s)	338, 574
BfaI	CTAG	3 cut(s)	380, 489, 554
BfmI	CTRYAG	1 cut(s)	567
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	362, 423
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	29, 543
BmsI	GCATC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 143, 623
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	628
BseCI	ATCGAT	1 cut(s)	610
BseLI	CCNNNNNNNGG	3 cut(s)	23, 143, 623
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	541
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	2 cut(s)	362, 423
BslFI	GGGAC	2 cut(s)	221, 231
BslI	CCNNNNNNNGG	3 cut(s)	23, 143, 623
BsmAI	GTCTC	2 cut(s)	338, 574
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	221, 231
BsmI	GAATGC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	362, 423
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	517, 563, 607
BspACI	CCGC	2 cut(s)	180, 215
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	29, 543
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	517, 563, 607
Bst4CI	ACNGT	3 cut(s)	142, 238, 560
Bst6I	CTCTTC	2 cut(s)	423, 572
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	520, 566, 610
BstMAI	GTCTC	2 cut(s)	338, 574
BstMBI	GATC	3 cut(s)	517, 563, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	517, 563
BstYI	RGATCY	2 cut(s)	517, 563
Bsu15I	ATCGAT	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	610
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	3 cut(s)	484, 524, 565
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	266, 436
CviJI	RGCY	7 cut(s)	30, 93, 105, 196, 246, 416, 440
CviKI_1	RGCY	7 cut(s)	30, 93, 105, 196, 246, 416, 440
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	519, 565, 609
DpnII	GATC	3 cut(s)	517, 563, 607
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	423, 572
EarI	CTCTTC	2 cut(s)	423, 572
EciI	GGCGGA	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	2 cut(s)	362, 423
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	269, 439
FaiI	YATR	5 cut(s)	39, 267, 285, 437, 456
FaqI	GGGAC	2 cut(s)	221, 231
FatI	CATG	2 cut(s)	265, 435
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	3 cut(s)	380, 489, 554
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	557
Hin1II	CATG	2 cut(s)	269, 439
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	3 cut(s)	6, 80, 638
Hpy166II	GTNNAC	3 cut(s)	263, 397, 551
Hpy188III	TCNNGA	5 cut(s)	52, 125, 362, 425, 470
Hpy8I	GTNNAC	3 cut(s)	263, 397, 551
HpyAV	CCTTC	2 cut(s)	104, 328
HpyCH4III	ACNGT	3 cut(s)	142, 238, 560
HpyCH4IV	ACGT	2 cut(s)	288, 347
HpyCH4V	TGCA	4 cut(s)	263, 446, 477, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	288, 347
Hsp92II	CATG	2 cut(s)	269, 439
Kzo9I	GATC	3 cut(s)	517, 563, 607
LmnI	GCTCC	2 cut(s)	27, 451
LpnPI	CCDG	8 cut(s)	51, 60, 190, 206, 313, 385, 434, 521
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	3 cut(s)	380, 489, 554
MaeII	ACGT	2 cut(s)	288, 347
MaeIII	GTNAC	2 cut(s)	289, 418
MalI	GATC	3 cut(s)	519, 565, 609
MboI	GATC	3 cut(s)	517, 563, 607
MboII	GAAGA	5 cut(s)	3, 440, 541, 589, 617
MflI	RGATCY	2 cut(s)	517, 563
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	34, 375
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	17, 110, 144, 219, 251, 405, 424, 532
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	3 cut(s)	156, 513, 640
MslI	CAYNNNNRTG	2 cut(s)	36, 278
MspA1I	CMGCKG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	541
NdeII	GATC	3 cut(s)	517, 563, 607
NlaIII	CATG	2 cut(s)	269, 439
NlaIV	GGNNCC	2 cut(s)	29, 543
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	289
PaeR7I	CTCGAG	1 cut(s)	423
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	29, 543
PsuI	RGATCY	2 cut(s)	517, 563
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	36, 278
SaqAI	TTAA	3 cut(s)	156, 513, 640
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	517, 563, 607
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	36, 278
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	34, 375
SsiI	CCGC	2 cut(s)	180, 215
SspMI	CTAG	3 cut(s)	380, 489, 554
TaaI	ACNGT	3 cut(s)	142, 238, 560
TaiI	ACGT	2 cut(s)	291, 350
TaqI	TCGA	2 cut(s)	424, 610
TasI	AATT	2 cut(s)	34, 375
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	156, 513, 640
Tru9I	TTAA	3 cut(s)	156, 513, 640
TscAI	CASTG	3 cut(s)	484, 531, 565
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	17, 97
TspRI	CASTG	3 cut(s)	484, 531, 565
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	380, 489, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.