Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

9158867 .. 9159275

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCTCGGAACAGGAGAGAAGGGATCCCCAGAAGAGGGCAGAGCTGGACGAAAAAGCACGGCGGGGAGAGACTGTTGTTCCCGGTGGAACTGGTGGCAAGAGCCTCGAGGCTCAGGAGCACCTTGCTGAAGGACGACACAAGGGAGGGGAGAAGGGAGGGCAGACAAGGAAGGAGCAGATAGGCCATGAAGGGTACCATGAGATGGGCAAGAAGGGTGGACTCAGCACCAAGGACAAGTCCGGAGGAGAGCGTGCTGCTGAGGAGGGTGTTCCGATTGACGAGTCCAAGTACAAAACTAAGAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

8.86

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 51	1.3e-17	Small hydrophilic plant seed protein
LEA_5	PF00477	50 - 98	8.3e-22	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	20, 33
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	197, 293
AfiI	CCNNNNNNNGG	3 cut(s)	36, 37, 205
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	20, 33
Ama87I	CYCGRG	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	2 cut(s)	3, 184
ApeKI	GCWGC	1 cut(s)	257
Asp718I	GGTACC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	27, 197
BmrFI	CCNGG	1 cut(s)	84
Bpu10I	CCTNAGC	2 cut(s)	114, 261
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	6, 231
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 37, 205
Bse1I	ACTGG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	6, 231
BseLI	CCNNNNNNNGG	3 cut(s)	36, 37, 205
BseMII	CTCAG	3 cut(s)	128, 238, 252
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	261, 278
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	5, 186
BshNI	GGYRCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	84, 243
BslI	CCNNNNNNNGG	3 cut(s)	36, 37, 205
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	5, 186
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	5, 186
BspCNI	CTCAG	3 cut(s)	127, 237, 253
BspEI	TCCGGA	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	27, 197
BspPI	GGATC	2 cut(s)	20, 33
BspT107I	GGYRCC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	6, 231
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	114, 224, 261, 300
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	5, 186
Cac8I	GCNNGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	196, 292
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	2 cut(s)	188, 200
CviJI	RGCY	5 cut(s)	5, 46, 105, 113, 186
CviKI_1	RGCY	5 cut(s)	5, 46, 105, 113, 186
CviQI	GTAC	2 cut(s)	196, 292
DdeI	CTNAG	4 cut(s)	114, 224, 261, 300
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	191, 203
FaiI	YATR	2 cut(s)	189, 201
FatI	CATG	2 cut(s)	187, 199
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	5, 186
HapII	CCGG	2 cut(s)	84, 243
Hin1II	CATG	2 cut(s)	191, 203
HinfI	GANTC	3 cut(s)	222, 284, 304
HpaII	CCGG	2 cut(s)	84, 243
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	10, 276
Hpy188III	TCNNGA	2 cut(s)	116, 243
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	6 cut(s)	15, 125, 148, 166, 185, 208
HpyCH4III	ACNGT	1 cut(s)	76
HpyF3I	CTNAG	4 cut(s)	114, 224, 261, 300
Hsp92II	CATG	2 cut(s)	191, 203
Kpn2I	TCCGGA	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	118, 175
LpnPI	CCDG	6 cut(s)	32, 44, 78, 97, 101, 256
Lsp1109I	GCAGC	1 cut(s)	244
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	216, 293
MnlI	CCTC	9 cut(s)	16, 30, 103, 116, 140, 152, 239, 256, 259
MroI	TCCGGA	1 cut(s)	242
MspI	CCGG	2 cut(s)	84, 243
MspR9I	CCNGG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	191, 203
NlaIV	GGNNCC	2 cut(s)	27, 197
PaeR7I	CTCGAG	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	216, 292
PpsI	GAGTC	2 cut(s)	216, 292
PspN4I	GGNNCC	2 cut(s)	27, 197
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	2 cut(s)	197, 293
RsaNI	GTAC	2 cut(s)	196, 292
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	2 cut(s)	216, 293
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	2 cut(s)	48, 126
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	108
TatI	WGTACW	1 cut(s)	291
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.