Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

885437 .. 887700

Gene Structure 2264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGTGATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTGGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGGCTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACAAGCTCTTACTACAGAGGCGCCCAAGGAATCATTCTCGTTTATGATGTGACGAGAAGGGAGACATTTACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTACTCCACAAACCAAGAATGTGTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACTCGACAAAACGTGGAACAGTGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGGTACCTAGTCTCTTGGAAGAAGGATCAAGTGCTGTGAAGAGAAACATCTTGAAGCAGAAACCAGAACACCAGACTAATACTCAATCCGGCTGTTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

6.0

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	11 - 172	4.2e-18	ADP-ribosylation factor family
Ras	PF00071	15 - 176	3.6e-56	Ras family
Roc	PF08477	15 - 130	1.6e-30	Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA	PF04670	15 - 133	1e-05	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	2 cut(s)	251, 532
AclWI	GGATC	2 cut(s)	13, 562
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	116, 148, 520, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	6 cut(s)	96, 108, 206, 237, 337, 630
AluI	AGCT	6 cut(s)	96, 108, 206, 237, 337, 630
Alw26I	GTCTC	2 cut(s)	287, 545
AlwI	GGATC	2 cut(s)	13, 562
ApeKI	GCWGC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	251, 532
BciVI	GTATCC	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	287, 545
BfaI	CTAG	5 cut(s)	105, 434, 474, 537, 631
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	20
BglII	AGATCT	2 cut(s)	45, 118
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	253, 534
BmsI	GCATC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	420
BshNI	GGYRCC	2 cut(s)	251, 532
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	287, 545
BsmFI	GGGAC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	504
Bsp143I	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	253, 534
BspPI	GGATC	2 cut(s)	13, 562
BspT104I	TTCGAA	1 cut(s)	504
BspT107I	GGYRCC	2 cut(s)	251, 532
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	3 cut(s)	166, 219, 498
Bst6I	CTCTTC	2 cut(s)	501, 563
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	504
BstDEI	CTNAG	2 cut(s)	307, 399
BstF5I	GGATG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	6 cut(s)	8, 34, 48, 121, 153, 557
BstMAI	GTCTC	2 cut(s)	287, 545
BstMBI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	244
BstX2I	RGATCY	3 cut(s)	5, 45, 118
BstYI	RGATCY	3 cut(s)	5, 45, 118
BsuI	GTATCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	227, 503
CfoI	GCGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	9 cut(s)	96, 108, 181, 206, 237, 337, 515, 621, 630
CviKI_1	RGCY	9 cut(s)	96, 108, 181, 206, 237, 337, 515, 621, 630
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	2 cut(s)	307, 399
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	6 cut(s)	7, 33, 47, 120, 152, 556
DpnII	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
Eam1104I	CTCTTC	2 cut(s)	501, 563
EarI	CTCTTC	2 cut(s)	501, 563
Eco130I	CCWWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	457
FaiI	YATR	2 cut(s)	276, 455
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	5 cut(s)	105, 434, 474, 537, 631
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	1 cut(s)	618
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	62, 261, 395
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	3 cut(s)	148, 461, 580
HpyAV	CCTTC	3 cut(s)	282, 416, 545
HpyCH4III	ACNGT	3 cut(s)	166, 219, 498
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	453, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	2 cut(s)	307, 399
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	536
Kzo9I	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
LmnI	GCTCC	2 cut(s)	113, 130
LpnPI	CCDG	6 cut(s)	51, 181, 192, 197, 606, 614
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	5 cut(s)	105, 434, 474, 537, 631
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	6 cut(s)	7, 33, 47, 120, 152, 556
MboI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
MboII	GAAGA	7 cut(s)	3, 128, 431, 518, 532, 560, 580
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	3 cut(s)	5, 45, 118
MluCI	AATT	1 cut(s)	158
Mly113I	GGCGCC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	164, 242, 398, 523
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	627
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	253, 534
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	62, 261, 395
PkrI	GCNGC	1 cut(s)	629
PluTI	GGCGCC	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	253, 534
PsuI	RGATCY	3 cut(s)	5, 45, 118
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	6 cut(s)	5, 31, 45, 118, 150, 554
SetI	ASST	9 cut(s)	98, 110, 208, 239, 339, 492, 534, 538, 632
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	244
SfoI	GGCGCC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	5 cut(s)	105, 434, 474, 537, 631
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	166, 219, 498
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	387, 481, 504
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	62, 261, 395
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	234, 503
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	627
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	2 cut(s)	234, 503
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	5 cut(s)	105, 434, 474, 537, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.