Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Forward (+)

41931203 .. 41933790

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTCTTGCTCCCATGATTGCAGGTGTGGATTTTAAAATTAAGCTGCTTACTGATACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTATAGAAGTGCCCAAGGAATCATTCTTGTGTATGATGTGACTCGGAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAATTATACTCAACTAATCAGGACTGTGTCCAGGTGCTTGTCGGGAATAAAGTTGATAGAGAATCTGAGAGGGCTGTGAGTATAGAAGTGGGCATTGCTCTTGCAAAAGATATTGGATGCATGTTTCTTGAATGTAGCGCCAAGACTAGAGAAAATGTGGAGCTTTGCTTTCAAGAGCTACCATTAAAGGGTTATGGAATTGTTGAGGAGATGAGTTTGGTGGTAGAAATGGAAGTTATGGAGGTGGAAATGGTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

4.56

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	17 - 123	4.8e-35	Ras family
Arf	PF00025	18 - 121	6.5e-07	ADP-ribosylation factor family
Roc	PF08477	19 - 82	2.9e-14	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	320, 362
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	46, 62, 93, 352, 367
AluI	AGCT	5 cut(s)	46, 62, 93, 352, 367
Alw26I	GTCTC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	329
CviAII	CATG	2 cut(s)	16, 310
CviJI	RGCY	7 cut(s)	46, 62, 93, 179, 263, 352, 367
CviKI_1	RGCY	7 cut(s)	46, 62, 93, 179, 263, 352, 367
DdeI	CTNAG	1 cut(s)	255
DraI	TTTAAA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	19, 313
FatI	CATG	2 cut(s)	15, 309
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	330
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	19, 313
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	117, 139, 251
Hpy188I	TCNGA	4 cut(s)	80, 144, 169, 256
Hpy188III	TCNNGA	4 cut(s)	209, 232, 317, 362
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	23, 293, 309
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	19, 313
HspAI	GCGC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	16, 349
LpnPI	CCDG	6 cut(s)	9, 48, 53, 194, 206, 233
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	39, 191, 387
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	66, 252, 388, 424
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	4 cut(s)	36, 42, 86, 374
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NlaIII	CATG	2 cut(s)	19, 313
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	117, 251
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	36, 42, 86, 374
SatI	GCNGC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	39, 191, 387
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	215
TasI	AATT	3 cut(s)	39, 191, 387
TfiI	GAWTC	2 cut(s)	117, 251
Tru1I	TTAA	4 cut(s)	36, 42, 86, 374
Tru9I	TTAA	4 cut(s)	36, 42, 86, 374
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.