Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

57235332 .. 57240988

Gene Structure 5657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG338800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCATTTGATGGGTCTTGCTCCCATGATTGCATGTGTGGATTTTAAAATTAAGCTGCTTACTGTTGGTGGGAAGAGAATTAAGATGACAATTTGGGATACAGCTGGACAGGAGAGGTTCAGAACATTAACAAGCTCTTACTATAGAAATGCCCAAGGAATCATTCTCGTGTATGATGTGACTCAAAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAACTATACTCAACTAATCAGGACTGTGTCAAGGTGCTTGTCGGGAATAAAGTTGATAGAGAATCTGAGAGGGCTGTGAGTAGAGAAGAGGGCATTGCTCTTGTAAAATATATTGGATGCATGTTTCTTGAATGTAGCGCCAAGACTAGAGAAAATGTGGAGCTTTGCTTTCAAGGGCTAGCATTAAAGGATGAAGTTCACATCAGAAAGCATAGACAAAGGCTGGCGGCACTGATGCTTAAAGACAATTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

8.52

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	12 - 135	5.2e-12	ADP-ribosylation factor family
Ras	PF00071	13 - 138	2.2e-41	Ras family
Roc	PF08477	24 - 96	2.3e-19	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	362, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	55, 104, 135, 394
AluI	AGCT	4 cut(s)	55, 104, 135, 394
Alw26I	GTCTC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	371
AsuNHI	GCTAGC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	378, 410
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	56, 459
BlsI	GCNGC	2 cut(s)	57, 460
BmsI	GCATC	2 cut(s)	338, 456
BmtI	GCTAGC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	353, 427
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	64, 257
Bst6I	CTCTTC	2 cut(s)	68, 312
BstC8I	GCNNGC	2 cut(s)	411, 456
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	353, 427
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	183
BstNSI	RCATGY	2 cut(s)	36, 355
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	353, 427
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	411, 456
CfoI	GCGC	1 cut(s)	371
CviAII	CATG	3 cut(s)	25, 33, 352
CviJI	RGCY	8 cut(s)	55, 104, 135, 221, 305, 394, 409, 454
CviKI_1	RGCY	8 cut(s)	55, 104, 135, 221, 305, 394, 409, 454
DdeI	CTNAG	1 cut(s)	297
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	68, 312
EarI	CTCTTC	2 cut(s)	68, 312
Eco130I	CCWWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	2 cut(s)	6, 353
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	28, 36, 355
FaiI	YATR	9 cut(s)	26, 34, 144, 174, 217, 238, 342, 353, 444
FatI	CATG	3 cut(s)	24, 32, 351
Fnu4HI	GCNGC	2 cut(s)	56, 459
FokI	GGATG	2 cut(s)	360, 434
Fsp4HI	GCNGC	2 cut(s)	56, 459
FspBI	CTAG	2 cut(s)	378, 410
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	56, 459
HaeII	RGCGCY	1 cut(s)	372
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	28, 36, 355
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	159, 181, 293
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	4 cut(s)	122, 211, 298, 437
Hpy188III	TCNNGA	3 cut(s)	251, 274, 359
Hpy8I	GTNNAC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	64, 257
HpyCH4V	TGCA	3 cut(s)	4, 32, 351
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	28, 36, 355
HspAI	GCGC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	25, 391
LpnPI	CCDG	4 cut(s)	90, 95, 236, 440
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	338, 456
MaeI	CTAG	2 cut(s)	378, 410
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	85, 329
MfeI	CAATTG	1 cut(s)	478
MluCI	AATT	4 cut(s)	48, 78, 90, 478
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	108, 294, 313
Mph1103I	ATGCAT	2 cut(s)	6, 353
MseI	TTAA	6 cut(s)	45, 51, 81, 128, 416, 471
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	478
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	28, 36, 355
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	6, 353
NspI	RCATGY	2 cut(s)	36, 355
PfeI	GAWTC	2 cut(s)	159, 293
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	57, 460
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	6 cut(s)	45, 51, 81, 128, 416, 471
SatI	GCNGC	2 cut(s)	56, 459
SchI	GAGTC	1 cut(s)	175
SetI	ASST	7 cut(s)	57, 106, 119, 137, 197, 267, 396
SfaNI	GCATC	2 cut(s)	338, 456
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	48, 78, 90, 478
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	2 cut(s)	378, 410
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	64, 257
TasI	AATT	4 cut(s)	48, 78, 90, 478
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	159, 293
Tru1I	TTAA	6 cut(s)	45, 51, 81, 128, 416, 471
Tru9I	TTAA	6 cut(s)	45, 51, 81, 128, 416, 471
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	257
XceI	RCATGY	2 cut(s)	36, 355
XspI	CTAG	2 cut(s)	378, 410
Zsp2I	ATGCAT	2 cut(s)	6, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.