Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010614.1

Orthogroup ID

OG0002293

Physical Location & Seq

Genomic Coordinates Reverse (-)

26238 .. 27851

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010614.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaagggttcaccaagaaattatgattactcattcaagattttgctggctggtgattctggtgttggaaagagcagtcttcttttgagcttcatctccaactttgttcaagacctttctcctacaattggtgtggatttcaagatcaaacagctttcaattgatgggaagagattgaagctaacaatatgggacacagctggacaggagaggttcggaacagtaataagctcttactacagaggtgcacatggaatcattcttgtgtacgatgtaacacggcgagaaacctttacaaatttatcaaatctgtgggcaaaggaagtagaccggtactccaccaatcaagattgcattaaaattctagtcgggaacaaagttgacagggataaagagagggttgtaaccagagaagaagggatggcacttgcacaggagcataaatgtttgtttcttgaatgtagtgctaaaactaaagaaaatgttcagcaatgctttaaagatctcacattgaagatgctggaggtaccaagtttactggaaagtggatctgtggacgtgaagagacaaattttgaagcagaaagaagcagaccagatgccttgcagcggcaattgctgctctcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

209

Amino Acids

23.56

Weight (kDa)

8.61

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT3G09910 AT5G03530 AT5G03530
fragaria_vesca	FvH4_6g16870 FvH4_7g18330
malus_domestica	MD01G1099300.v1.1 MD04G1088900.v1.1 MD07G1166100.v1.1 MD12G1106600.v1.1
prunus_persica	Prupe.2G205300_v2.0.a1 Prupe.7G125400_v2.0.a1
pyrus_communis	pycom04g08350 pycom07g16160 pycom12g10710
rosa_chinensis	RchiOBHm_Chr1g0362041 RchiOBHm_Chr3g0470891 RchiOBHm_Chr5g0009971 RchiOBHm_Chr5g0067631
rosa_laevigata	RLG00000024236 RLG00000027678
rosa_multiflora	Rmu_sc0010614.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294550 Rroxscaffold_6G00410440
rosa_rugosa	Rorug01G0292900 Rorug01G0293000 Rorug03G0113400
rosa_samantha	Rh1AG303200 Rh1AG338800 Rh1BG266400 Rh1CG284600 Rh1DG296400 Rh3AG163200 Rh3BG188600 Rh3CG178600 Rh3DG187500
rosa_wichuraiana	Rw1G027000 Rw3G015370 Rw5G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	298, 360, 570
AfaI	GTAC	3 cut(s)	269, 335, 528
AfiI	CCNNNNNNNGG	2 cut(s)	128, 608
AgeI	ACCGGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	37, 110, 142, 159, 178, 458, 514, 577
AjiI	CACGTC	1 cut(s)	559
AluBI	AGCT	5 cut(s)	90, 154, 181, 200, 231
AluI	AGCT	5 cut(s)	90, 154, 181, 200, 231
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	559
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	556
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	606, 618
ApoI	RAATTY	3 cut(s)	298, 360, 570
AsiGI	ACCGGT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	483
Asp718I	GGTACC	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	3, 65
BaeGI	GKGCMC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	605, 618
BccI	CCATC	2 cut(s)	158, 415
BceAI	ACGGC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	238
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	3 cut(s)	607, 610, 619
BlsI	GCNGC	3 cut(s)	608, 611, 620
BmgBI	CACGTC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	528
BmsI	GCATC	2 cut(s)	507, 588
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 608
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	128, 608
BseMI	GCAATG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	605, 618
BshNI	GGYRCC	1 cut(s)	526
BshTI	ACCGGT	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	128, 608
BsmAI	GTCTC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	144, 502, 548
BspACI	CCGC	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	543
BssAI	RCCGGY	1 cut(s)	330
BssMI	GATC	3 cut(s)	144, 502, 548
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	164, 557
BstAPI	GCANNNNNTGC	1 cut(s)	618
BstC8I	GCNNGC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	3 cut(s)	147, 505, 551
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	3 cut(s)	144, 502, 548
BstMWI	GCNNNNNNNGC	2 cut(s)	615, 618
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	605, 618
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	502, 548
BstYI	RGATCY	2 cut(s)	502, 548
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	330
Csp6I	GTAC	3 cut(s)	268, 334, 527
CspAI	ACCGGT	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	6 cut(s)	50, 90, 154, 181, 200, 231
CviKI_1	RGCY	6 cut(s)	50, 90, 154, 181, 200, 231
CviQI	GTAC	3 cut(s)	268, 334, 527
DpnI	GATC	3 cut(s)	146, 504, 550
DpnII	GATC	3 cut(s)	144, 502, 548
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	164, 557
EarI	CTCTTC	2 cut(s)	164, 557
FaeI	CATG	1 cut(s)	254
FaiI	YATR	4 cut(s)	24, 190, 252, 441
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	607, 610, 619
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	607, 610, 619
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	3 cut(s)	607, 610, 619
GsuI	CTGGAG	1 cut(s)	542
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	56, 255
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	3, 65
Hpy166II	GTNNAC	7 cut(s)	11, 248, 268, 328, 382, 536, 556
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	6 cut(s)	37, 110, 142, 347, 370, 455
Hpy8I	GTNNAC	7 cut(s)	11, 248, 268, 328, 382, 536, 556
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	4 cut(s)	248, 354, 431, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	615, 618
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	1 cut(s)	254
KpnI	GGTACC	1 cut(s)	530
Kzo9I	GATC	3 cut(s)	144, 502, 548
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	2 cut(s)	605, 618
LweI	GCATC	2 cut(s)	507, 588
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	274, 403
MalI	GATC	3 cut(s)	146, 504, 550
MboI	GATC	3 cut(s)	144, 502, 548
MboII	GAAGA	5 cut(s)	71, 181, 425, 526, 574
MfeI	CAATTG	3 cut(s)	126, 159, 613
MflI	RGATCY	2 cut(s)	502, 548
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	19, 126, 159, 298, 360, 570, 613
MmeI	TCCRAC	2 cut(s)	46, 123
MnlI	CCTC	4 cut(s)	204, 236, 390, 517
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	357, 498
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	200, 609
MspI	CCGG	1 cut(s)	331
MunI	CAATTG	3 cut(s)	126, 159, 613
MwoI	GCNNNNNNNGC	2 cut(s)	615, 618
NdeII	GATC	3 cut(s)	144, 502, 548
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	56, 255
PinAI	ACCGGT	1 cut(s)	330
PkrI	GCNGC	3 cut(s)	608, 611, 620
PspN4I	GGNNCC	1 cut(s)	528
PsuI	RGATCY	2 cut(s)	502, 548
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	269, 335, 528
RsaNI	GTAC	3 cut(s)	268, 334, 527
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	357, 498
SatI	GCNGC	3 cut(s)	607, 610, 619
Sau3AI	GATC	3 cut(s)	144, 502, 548
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	507, 588
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	7 cut(s)	19, 126, 159, 298, 360, 570, 613
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	561
TasI	AATT	7 cut(s)	19, 126, 159, 298, 360, 570, 613
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	56, 255
Tru1I	TTAA	2 cut(s)	357, 498
Tru9I	TTAA	2 cut(s)	357, 498
TseI	GCWGC	2 cut(s)	606, 618
TspDTI	ATGAA	2 cut(s)	17, 82
VneI	GTGCAC	1 cut(s)	246
XapI	RAATTY	3 cut(s)	298, 360, 570
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.