AT3G12940
ERF Family

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4129585 .. 4132467
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12940.1

Sequence Viewer

Length: 1425 bp
ATGATGGCAGGAAATGGAATGCCTACATTGGGTCGTGTCAAGGTTTGTGATTTAGTTCCCAGTGAAGGTCTACCTTCTGATTCTTACAAGTTAGCGGTGACTACATTGTCTCAATCTCTGGCACAGTACTCTGCAGCCATCATTCAGTTTCCTGCTAGCGATGGAGCCCTCCTTAGATCCGGTCTTGATTCTGCTCGGCTTTATTTTCACCAGAGAGATTCATATCCAGCCACTAATAATATGATCCACACAAATGATTCACAAGAATGGTGCAAGACTTCTGGCTACTATGCAGATCCTCAGTCGTGGCAAGAGAGTTACGAGTATAGACCTGGTTTGACTCCGACCGAGCCAAGCAATTCTATGGAGTTCCCTCCTGCTGGTTTGCCTGATATCTTTGCTTTACTAGGAAAAGCTGCTCGTGTAGTTCTTGATGCCATTGGTTTCTATTTGAACTTGAGAAGCTGTCCATTTACTGAGATTCTTGATAATGTCCCTTTGAGAAATTGTGAGGTATCGTCTTCTGTGTTATCTGTTTGCTGTTATGCTAGGCCATCCTTTCATGGAGCACAGCACCATAGCTTAACAGAAGACGAGCAGCTTATCCTGTATTCAGACCATGATCACCAACTTGACAAGAGTCTGATCTCATTTGTGAAATCAGATAAGGCGGGGTTGCACATCAGGGACATGCATGGGCAATGGATTTTAGTTGATGTGGATCTTGGTCCTCAAGAGGCTGTTGTGTACCCGGGGCTAGCTCTTTACCAGGCTACAGCGGGGTATGTGAGTCCCGCAGTGCACAGAACCGATTTGAACAGTCTGCAAGGAAGTATAGAAGGGAGGTTCTCCTTGGCCTTCAAACTCATGCCAAAATCAATGACCAATCTGAGTTGCTCGGAGATGAGAGCAGCAGGTCATGGTGTTGAAGCTCAGTTTCAGCTCCCCGTTTCTGTTGATGACTTCATGCAGAGATCTCACTCAAATGATGAACTTTTTAACAGACAGACTTTGCAAAGCTTCATCGTCCCTCAATCCCAGGATGGATCAATGAAACAGCTGAAAAAACGGAGGAAGAGTGATTCTAGATGCAAACCACTACCACCTTCAAAACGGCTGAGGTTAGAAGCACAGAGAGTTCTCAAGGAACGAGTTCAGGAGATTGCAGATAAAAAAGGAATCAAACTAAGATTCTGCAATCTCAAGGAGTGCGAGAATAACCACAATGTAATGAACAGCCCTTGTGCTAATATAAGAAGGGAGATCGGGTGGCCGCACGGAGTTCCATTTGTTCATCCTCACGACCTACCCAATAAAGCGAAAATCGGTTTCCTTGAGACATATGAGCCTGGATGGTCTGAAACACATGACATGGAGTTCAGTCTGTCTGAAACCGCTCAGGGAAACCAACATGTGACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

474

Amino Acids

53.0

Weight (kDa)

6.31

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 905
AccBSI CCGCTC 1 cut(s) 1397
AccI GTMKAC 1 cut(s) 70
AciI CCGC 6 cut(s) 95, 671, 779, 795, 1274, 1395
AclWI GGATC 5 cut(s) 171, 238, 290, 729, 1054
AcoI YGGCCR 1 cut(s) 1271
AfaI GTAC 2 cut(s) 128, 749
AfiI CCNNNNNNNGG 3 cut(s) 29, 65, 380
AflIII ACRYGT 1 cut(s) 1411
AgsI TTSAA 5 cut(s) 454, 817, 862, 929, 1110
AjnI CCWGG 4 cut(s) 331, 768, 1038, 1348
AluBI AGCT 9 cut(s) 416, 465, 582, 601, 761, 932, 943, 1020, 1060
AluI AGCT 9 cut(s) 416, 465, 582, 601, 761, 932, 943, 1020, 1060
Alw21I GWGCWC 2 cut(s) 571, 804
Alw26I GTCTC 2 cut(s) 114, 1331
Alw44I GTGCAC 1 cut(s) 800
AlwI GGATC 5 cut(s) 171, 238, 290, 729, 1054
Ama87I CYCGRG 1 cut(s) 751
AoxI GGCC 3 cut(s) 551, 855, 1271
ApaLI GTGCAC 1 cut(s) 800
ApeKI GCWGC 4 cut(s) 134, 416, 598, 911
Asp700I GAANNNNTTC 1 cut(s) 1152
AspS9I GGNCC 1 cut(s) 728
AsuC2I CCSGG 2 cut(s) 752, 753
AsuHPI GGTGA 3 cut(s) 109, 200, 617
AsuNHI GCTAGC 2 cut(s) 155, 757
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 804
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 513, 597
Bbv12I GWGCWC 2 cut(s) 571, 804
BbvCI CCTCAGC 1 cut(s) 1118
BbvI GCAGC 4 cut(s) 146, 403, 610, 923
BccI CCATC 5 cut(s) 146, 155, 562, 1037, 1347
BceAI ACGGC 1 cut(s) 1130
BciT130I CCWGG 4 cut(s) 333, 770, 1040, 1350
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 2 cut(s) 752, 753
BcoDI GTCTC 2 cut(s) 114, 1331
BfaI CTAG 5 cut(s) 156, 407, 549, 758, 1086
BfmI CTRYAG 2 cut(s) 132, 774
BfuAI ACCTGC 1 cut(s) 905
BglII AGATCT 1 cut(s) 974
BisI GCNGC 5 cut(s) 135, 417, 599, 912, 1274
BlsI GCNGC 5 cut(s) 136, 418, 600, 913, 1275
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 6 cut(s) 333, 752, 753, 770, 1040, 1350
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 728
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 6 cut(s) 333, 752, 753, 770, 1040, 1350
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 424, 1079
BmtI GCTAGC 2 cut(s) 159, 761
BmuI ACTGGG 1 cut(s) 54
BoxI GACNNNNGTC 1 cut(s) 639
BpiI GAAGAC 2 cut(s) 513, 597
Bpu10I CCTNAGC 2 cut(s) 1118, 1398
BpuEI CTTGAG 5 cut(s) 478, 717, 1127, 1187, 1355
BpuMI CCSGG 2 cut(s) 752, 753
BsaBI GATNNNNATC 2 cut(s) 222, 720
BsaJI CCNNGG 4 cut(s) 751, 752, 852, 1038
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 1063, 1093, 1253, 1283
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 65, 380
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 707
Bse8I GATNNNNATC 2 cut(s) 222, 720
BseBI CCWGG 4 cut(s) 333, 770, 1040, 1350
BseDI CCNNGG 4 cut(s) 751, 752, 852, 1038
BseGI GGATG 4 cut(s) 554, 1048, 1294, 1358
BseJI GATNNNNATC 2 cut(s) 222, 720
BseLI CCNNNNNNNGG 3 cut(s) 29, 65, 380
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 6 cut(s) 314, 468, 881, 947, 1109, 1412
BseNI ACTGG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 804
BseXI GCAGC 4 cut(s) 146, 403, 610, 923
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 553, 857, 1273
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 571, 804
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 2 cut(s) 180, 752
BslFI GGGAC 4 cut(s) 479, 701, 777, 1013
BslI CCNNNNNNNGG 3 cut(s) 29, 65, 380
BsmAI GTCTC 2 cut(s) 114, 1331
BsmFI GGGAC 4 cut(s) 479, 701, 777, 1013
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 3 cut(s) 553, 857, 1273
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 3 cut(s) 169, 571, 804
Bsp143I GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
BspACI CCGC 6 cut(s) 95, 671, 779, 795, 1274, 1395
BspANI GGCC 3 cut(s) 553, 857, 1273
BspCNI CTCAG 6 cut(s) 313, 469, 882, 946, 1110, 1411
BspLI GGNNCC 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 905
BspOI GCTAGC 2 cut(s) 159, 761
BspPI GGATC 5 cut(s) 171, 238, 290, 729, 1054
BsrBI CCGCTC 1 cut(s) 1397
BsrDI GCAATG 1 cut(s) 707
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 4 cut(s) 751, 752, 852, 1038
BssMI GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 852
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 4 cut(s) 333, 770, 1040, 1350
Bst4CI ACNGT 2 cut(s) 126, 821
Bst6I CTCTTC 1 cut(s) 1070
BstC8I GCNNGC 2 cut(s) 157, 759
BstDEI CTNAG 8 cut(s) 173, 300, 477, 890, 933, 1118, 1187, 1398
BstF5I GGATG 4 cut(s) 554, 1048, 1294, 1358
BstKTI GATC 9 cut(s) 179, 246, 298, 625, 648, 724, 977, 1049, 1266
BstMAI GTCTC 2 cut(s) 114, 1331
BstMBI GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
BstMCI CGRYCG 1 cut(s) 348
BstNI CCWGG 4 cut(s) 333, 770, 1040, 1350
BstNSI RCATGY 2 cut(s) 694, 1415
BstPAI GACNNNNGTC 1 cut(s) 639
BstSCI CCNGG 6 cut(s) 331, 750, 751, 768, 1038, 1348
BstSFI CTRYAG 2 cut(s) 132, 774
BstSLI GKGCMC 1 cut(s) 804
BstV1I GCAGC 4 cut(s) 146, 403, 610, 923
BstV2I GAAGAC 2 cut(s) 513, 597
BstX2I RGATCY 4 cut(s) 176, 295, 721, 974
BstYI RGATCY 4 cut(s) 176, 295, 721, 974
BsuRI GGCC 3 cut(s) 553, 857, 1273
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 4 cut(s) 554, 1048, 1294, 1358
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 67, 804
BveI ACCTGC 1 cut(s) 905
Cac8I GCNNGC 2 cut(s) 157, 759
Cfr13I GGNCC 1 cut(s) 728
Cfr9I CCCGGG 1 cut(s) 751
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 127, 748
CviQI GTAC 2 cut(s) 127, 748
DdeI CTNAG 8 cut(s) 173, 300, 477, 890, 933, 1118, 1187, 1398
DpnI GATC 9 cut(s) 178, 245, 297, 624, 647, 723, 976, 1048, 1265
DpnII GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 1271
Eam1104I CTCTTC 1 cut(s) 1070
EarI CTCTTC 1 cut(s) 1070
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 751
EcoRII CCWGG 4 cut(s) 331, 768, 1038, 1348
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 852
EcoT22I ATGCAT 1 cut(s) 696
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 852
FaqI GGGAC 4 cut(s) 479, 701, 777, 1013
FauI CCCGC 3 cut(s) 664, 772, 802
FauNDI CATATG 1 cut(s) 1342
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 5 cut(s) 135, 417, 599, 912, 1274
FokI GGATG 4 cut(s) 541, 1055, 1281, 1365
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 5 cut(s) 135, 417, 599, 912, 1274
FspBI CTAG 5 cut(s) 156, 407, 549, 758, 1086
GluI GCNGC 5 cut(s) 135, 417, 599, 912, 1274
HaeIII GGCC 3 cut(s) 553, 857, 1273
HapII CCGG 2 cut(s) 180, 752
HindIII AAGCTT 1 cut(s) 1018
HpaII CCGG 2 cut(s) 180, 752
HphI GGTGA 3 cut(s) 109, 200, 617
Hpy166II GTNNAC 3 cut(s) 71, 748, 802
Hpy188I TCNGA 9 cut(s) 79, 345, 616, 645, 664, 891, 901, 1360, 1390
Hpy188III TCNNGA 7 cut(s) 185, 431, 485, 734, 1086, 1157, 1301
Hpy8I GTNNAC 3 cut(s) 71, 748, 802
HpyAV CCTTC 6 cut(s) 59, 84, 833, 868, 1116, 1251
HpyCH4III ACNGT 2 cut(s) 126, 821
HpyF3I CTNAG 8 cut(s) 173, 300, 477, 890, 933, 1118, 1187, 1398
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
LmnI GCTCC 3 cut(s) 164, 566, 948
Lsp1109I GCAGC 4 cut(s) 146, 403, 610, 923
LweI GCATC 2 cut(s) 424, 1079
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 5 cut(s) 156, 407, 549, 758, 1086
MaeIII GTNAC 3 cut(s) 97, 317, 1414
MalI GATC 9 cut(s) 178, 245, 297, 624, 647, 723, 976, 1048, 1265
MbiI CCGCTC 1 cut(s) 1397
MboI GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
MboII GAAGA 3 cut(s) 513, 602, 1087
MflI RGATCY 4 cut(s) 176, 295, 721, 974
MhlI GDGCHC 3 cut(s) 169, 571, 804
MluCI AATT 2 cut(s) 358, 505
MlyI GAGTC 3 cut(s) 334, 649, 799
MmeI TCCRAC 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 1152
MseI TTAA 2 cut(s) 584, 999
MslI CAYNNNNRTG 3 cut(s) 252, 265, 984
MspA1I CMGCKG 2 cut(s) 779, 1060
MspI CCGG 2 cut(s) 180, 752
MspR9I CCNGG 6 cut(s) 333, 752, 753, 770, 1040, 1350
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 4 cut(s) 333, 770, 1040, 1350
NciI CCSGG 2 cut(s) 752, 753
NdeI CATATG 1 cut(s) 1342
NdeII GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
NheI GCTAGC 2 cut(s) 155, 757
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 97, 1414
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 2 cut(s) 694, 1415
PciI ACATGT 1 cut(s) 1411
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 1152
PfeI GAWTC 8 cut(s) 80, 188, 218, 257, 481, 1082, 1179, 1191
PkrI GCNGC 5 cut(s) 136, 418, 600, 913, 1275
PleI GAGTC 3 cut(s) 334, 648, 798
PpsI GAGTC 3 cut(s) 334, 648, 798
PscI ACATGT 1 cut(s) 1411
PshAI GACNNNNGTC 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 331, 768, 1038, 1348
PspGI CCWGG 4 cut(s) 331, 768, 1038, 1348
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 728
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 4 cut(s) 176, 295, 721, 974
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 2 cut(s) 128, 749
RsaNI GTAC 2 cut(s) 127, 748
RseI CAYNNNNRTG 3 cut(s) 252, 265, 984
SaqAI TTAA 2 cut(s) 584, 999
SatI GCNGC 5 cut(s) 135, 417, 599, 912, 1274
Sau3AI GATC 9 cut(s) 176, 243, 295, 622, 645, 721, 974, 1046, 1263
Sau96I GGNCC 1 cut(s) 728
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 3 cut(s) 334, 649, 799
ScrFI CCNGG 6 cut(s) 333, 752, 753, 770, 1040, 1350
SduI GDGCHC 3 cut(s) 169, 571, 804
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 2 cut(s) 424, 1079
SfcI CTRYAG 2 cut(s) 132, 774
SinI GGWCC 1 cut(s) 728
SmaI CCCGGG 1 cut(s) 753
SmiMI CAYNNNNRTG 3 cut(s) 252, 265, 984
SmlI CTYRAG 5 cut(s) 457, 732, 1142, 1202, 1334
SmoI CTYRAG 5 cut(s) 457, 732, 1142, 1202, 1334
Sse9I AATT 2 cut(s) 358, 505
SsiI CCGC 6 cut(s) 95, 671, 779, 795, 1274, 1395
SspMI CTAG 5 cut(s) 156, 407, 549, 758, 1086
StyD4I CCNGG 6 cut(s) 331, 750, 751, 768, 1038, 1348
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 2 cut(s) 126, 821
TaqII GACCGA 1 cut(s) 362
TasI AATT 2 cut(s) 358, 505
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 1276
TfiI GAWTC 8 cut(s) 80, 188, 218, 257, 481, 1082, 1179, 1191
Tru1I TTAA 2 cut(s) 584, 999
Tru9I TTAA 2 cut(s) 584, 999
TscAI CASTG 2 cut(s) 67, 804
TseFI GTSAC 2 cut(s) 97, 1414
TseI GCWGC 4 cut(s) 134, 416, 598, 911
Tsp45I GTSAC 2 cut(s) 97, 1414
TspDTI ATGAA 8 cut(s) 210, 551, 955, 1005, 1012, 1067, 1247, 1283
TspGWI ACGGA 2 cut(s) 1084, 1293
TspMI CCCGGG 1 cut(s) 751
TspRI CASTG 2 cut(s) 67, 804
VneI GTGCAC 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 728
XbaI TCTAGA 1 cut(s) 1085
XceI RCATGY 2 cut(s) 694, 1415
XmaI CCCGGG 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 1152
XspI CTAG 5 cut(s) 156, 407, 549, 758, 1086
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.