Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

9908949 .. 9912980

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCAAGTAATGGCCTGCCATCTCTGGGTCGTGTGAAGCTAGCTGATCTCATACCTTCTGAAGGCCTTCCGTCAGATTCATACAAACTATCTGTTTCGACTTTGTCACAATCGTTGGCCCAATATTCCGCTGCCATTATTCAATTTTCAGTGAGTGACGCAGCTCTTTTGAGGTCCGGTTTAGATTCTGCTCGCCTCTACTTCCATCAAAGAGCATCATACCCAGCTCCAGACATTGTTCATACCAATGATCCTCGTGACTGGTGCAAGACTTCTGGGTATAATGCAGATCCTCAATTGTGGCTGGAAACCTATGATTATAGACCTGGAGTAACTCCTTTAGAACCCAACAACATGATGGAATTTCCTCCAGCTGGTTTGCCAGATATATTTTCAGTGCTTGGAAAGGCTGGTAGGGACATATTGGATGCAATCAGCTTCTATTTGAACTTACGGAGCTCGCCATTTACGGATATACTTGACAATGTTCCATTAAGAAATCAGGAAATATCATCATCAGTATTGTCTGTCTGCTGTCATGCAAGGCCATCATATCAAGGATCACAACACCATAACTTTGCAACCCAAGAGGATGGCCAATTGGTTATGTTTTCTGACCATGAGCATCAAGTAGACAAAACTTTGATATCTGTTGTCAAGTCAGATAAGCCAGGCCTACACATAAAGGACTTTCAGGGTCGTTGGGTTCTTGTAGATGAAGATCTTGGTCCTCAAGAAGCTATTGTTTACCCTGGACTTGCACTGTATCAGGCAACTGCAGGATATGTTAACCCCGCCCTGCAAAGAACAGAGATCACTAATATACAGAACAACTTGTTTGGCCGATGTTCTTTGGCGTTTAAACTAATGCCCAAATCTATGACCAGTCTCAGTTGCTCAGAGATGAGAGCTGCTGGTCATGGGGTTGACCCACAGTTCCAGCTTCCAGTACCAGTTGACGACTTTATGCAAAGGTCTCACCCGATTGATCAATTTTTTAACCGACAGACTGTTCAGAGTTTCAATTTCCATGCAACCCCAGATGGGTCTATGAAGCCTATGATGAGGAGGAGGAAGAATGATTCAAAATCCAAACCTCTGCCACCTTCCAAAAGATTACGACTGGAGGCCCAGAGAGTTCTAAAGGAAAGGGTTCAAGATATTGCAGACAAGAAAGGTATCAAGCTGAGGTTCTGCCCCCTGAAGGATTGTGAGACTCACATTCAAACACTTGATAGCCCATGTGCCACTATAAGAATGGAGATTGGGTGGCCGCATGGAGTGCCATTTGTTCATCCACATGATCTTCCCAATAAGGCAAAGATTGGTTTCCTTGAAGCATATGAACCTGGTTGGTCAGCTACCAATGATATGGAGTTAGGTCTAACCGAACCTGGCCAGGCCAGTCAGTCGGCACTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

52.76

Weight (kDa)

6.31

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	3 cut(s)	129, 795, 1274
AclWI	GGATC	3 cut(s)	245, 284, 568
AcoI	YGGCCR	4 cut(s)	595, 841, 1271, 1396
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	81, 1223
AfaI	GTAC	1 cut(s)	951
AfiI	CCNNNNNNNGG	5 cut(s)	26, 62, 374, 1044, 1204
AgsI	TTSAA	7 cut(s)	143, 448, 1024, 1086, 1157, 1226, 1337
AjnI	CCWGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	893, 981, 1208
AlwI	GGATC	3 cut(s)	245, 284, 568
ApeKI	GCWGC	3 cut(s)	131, 161, 911
ApoI	RAATTY	1 cut(s)	362
Asp700I	GAANNNNTTC	2 cut(s)	66, 1152
AspS9I	GGNCC	4 cut(s)	118, 174, 728, 1129
AsuHPI	GGTGA	1 cut(s)	971
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	174, 728
BalI	TGGCCA	2 cut(s)	597, 1398
BanII	GRGCYC	1 cut(s)	461
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	1187
BbvI	GCAGC	3 cut(s)	118, 173, 898
BccI	CCATC	6 cut(s)	28, 213, 352, 556, 587, 1037
BciT130I	CCWGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	3 cut(s)	893, 981, 1208
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	777
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	4 cut(s)	132, 162, 912, 1274
BlsI	GCNGC	4 cut(s)	133, 163, 913, 1275
Bme1390I	CCNGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
Bme18I	GGWCC	2 cut(s)	174, 728
BmgT120I	GGNCC	4 cut(s)	118, 174, 728, 1129
BmrFI	CCNGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
BmsI	GCATC	3 cut(s)	224, 418, 634
BmtI	GCTAGC	1 cut(s)	44
BpmI	CTGGAG	4 cut(s)	213, 348, 354, 1145
Bpu10I	CCTNAGC	1 cut(s)	1187
BpuEI	CTTGAG	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	981
BsaJI	CCNNGG	1 cut(s)	751
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	1253, 1283
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 62, 374, 1044, 1204
Bse1I	ACTGG	6 cut(s)	266, 885, 947, 953, 1128, 1404
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	3 cut(s)	433, 598, 1294
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	5 cut(s)	26, 62, 374, 1044, 1204
BseMII	CTCAG	3 cut(s)	904, 912, 1178
BseNI	ACTGG	6 cut(s)	266, 885, 947, 953, 1128, 1404
BseRI	GAGGAG	2 cut(s)	1081, 1084
BseXI	GCAGC	3 cut(s)	118, 173, 898
BseYI	CCCAGC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	5 cut(s)	26, 62, 374, 1044, 1204
BsmAI	GTCTC	3 cut(s)	893, 981, 1208
BsmFI	GGGAC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
BspACI	CCGC	3 cut(s)	129, 795, 1274
BspCNI	CTCAG	3 cut(s)	903, 911, 1179
BspMAI	CTGCAG	1 cut(s)	781
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	245, 284, 568
BspTNI	GGTCTC	1 cut(s)	981
BsrI	ACTGG	6 cut(s)	266, 885, 947, 953, 1128, 1404
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
Bst4CI	ACNGT	3 cut(s)	765, 936, 1012
BstAPI	GCANNNNNTGC	1 cut(s)	1282
BstC8I	GCNNGC	4 cut(s)	17, 42, 193, 461
BstDEI	CTNAG	3 cut(s)	890, 898, 1187
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	433, 598, 1294
BstKTI	GATC	8 cut(s)	49, 253, 292, 563, 724, 816, 991, 1306
BstMAI	GTCTC	3 cut(s)	893, 981, 1208
BstMBI	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
BstMWI	GCNNNNNNNGC	1 cut(s)	1282
BstNI	CCWGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
BstSCI	CCNGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	3 cut(s)	118, 173, 898
BstX2I	RGATCY	2 cut(s)	289, 721
BstXI	CCANNNNNNTGG	2 cut(s)	593, 1372
BstYI	RGATCY	2 cut(s)	289, 721
BtsCI	GGATG	3 cut(s)	433, 598, 1294
BtsIMutI	CAGTG	3 cut(s)	156, 402, 761
Cac8I	GCNNGC	4 cut(s)	17, 42, 193, 461
Cfr13I	GGNCC	4 cut(s)	118, 174, 728, 1129
CseI	GACGC	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	1348
Csp6I	GTAC	1 cut(s)	950
CviAII	CATG	8 cut(s)	355, 539, 620, 920, 1031, 1242, 1277, 1301
CviQI	GTAC	1 cut(s)	950
DdeI	CTNAG	3 cut(s)	890, 898, 1187
DpnI	GATC	8 cut(s)	48, 252, 291, 562, 723, 815, 990, 1305
DpnII	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
DraI	TTTAAA	1 cut(s)	862
EaeI	YGGCCR	4 cut(s)	595, 841, 1271, 1396
Ecl136II	GAGCTC	1 cut(s)	459
Eco147I	AGGCCT	2 cut(s)	66, 675
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	174, 728
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	81, 1223
EcoICRI	GAGCTC	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoRII	CCWGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
EcoRV	GATATC	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	8 cut(s)	358, 542, 623, 923, 1034, 1245, 1280, 1304
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	8 cut(s)	354, 538, 619, 919, 1030, 1241, 1276, 1300
FauI	CCCGC	1 cut(s)	802
FauNDI	CATATG	1 cut(s)	1342
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	4 cut(s)	132, 162, 912, 1274
FokI	GGATG	3 cut(s)	440, 605, 1281
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	4 cut(s)	132, 162, 912, 1274
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	4 cut(s)	132, 162, 912, 1274
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	4 cut(s)	213, 348, 354, 1145
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	8 cut(s)	358, 542, 623, 923, 1034, 1245, 1280, 1304
HincII	GTYRAC	3 cut(s)	790, 928, 958
HindII	GTYRAC	3 cut(s)	790, 928, 958
HinfI	GANTC	4 cut(s)	77, 185, 1082, 1216
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	5 cut(s)	634, 748, 790, 928, 958
Hpy188I	TCNGA	6 cut(s)	61, 76, 616, 664, 901, 1017
Hpy188III	TCNNGA	5 cut(s)	230, 257, 503, 734, 1157
Hpy8I	GTNNAC	5 cut(s)	634, 748, 790, 928, 958
HpyAV	CCTTC	5 cut(s)	56, 66, 77, 1116, 1198
HpyCH4III	ACNGT	3 cut(s)	765, 936, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1282
HpyF3I	CTNAG	3 cut(s)	890, 898, 1187
Hsp92II	CATG	8 cut(s)	358, 542, 623, 923, 1034, 1245, 1280, 1304
Ksp22I	TGATCA	1 cut(s)	988
KspAI	GTTAAC	1 cut(s)	790
Kzo9I	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
LmnI	GCTCC	2 cut(s)	232, 456
Lsp1109I	GCAGC	3 cut(s)	118, 173, 898
LweI	GCATC	3 cut(s)	224, 418, 634
MabI	ACCWGGT	1 cut(s)	1348
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	105, 155, 257, 331
MalI	GATC	8 cut(s)	48, 252, 291, 562, 723, 815, 990, 1305
MboI	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
MboII	GAAGA	3 cut(s)	731, 1087, 1298
MfeI	CAATTG	2 cut(s)	296, 599
MflI	RGATCY	2 cut(s)	289, 721
MhlI	GDGCHC	1 cut(s)	461
MlsI	TGGCCA	2 cut(s)	597, 1398
MluCI	AATT	6 cut(s)	143, 296, 362, 599, 992, 1024
MluNI	TGGCCA	2 cut(s)	597, 1398
MlyI	GAGTC	1 cut(s)	1210
Mox20I	TGGCCA	2 cut(s)	597, 1398
MroXI	GAANNNNTTC	2 cut(s)	66, 1152
MscI	TGGCCA	2 cut(s)	597, 1398
MseI	TTAA	4 cut(s)	494, 789, 861, 999
MslI	CAYNNNNRTG	2 cut(s)	246, 1299
Msp20I	TGGCCA	2 cut(s)	597, 1398
MspA1I	CMGCKG	2 cut(s)	131, 374
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
MssI	GTTTAAAC	1 cut(s)	862
MunI	CAATTG	2 cut(s)	296, 599
MvaI	CCWGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
MwoI	GCNNNNNNNGC	1 cut(s)	1282
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	8 cut(s)	358, 542, 623, 923, 1034, 1245, 1280, 1304
NmuCI	GTSAC	3 cut(s)	105, 155, 257
PceI	AGGCCT	2 cut(s)	66, 675
PdmI	GAANNNNTTC	2 cut(s)	66, 1152
PfeI	GAWTC	3 cut(s)	77, 185, 1082
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	133, 163, 913, 1275
PleI	GAGTC	1 cut(s)	1210
PmeI	GTTTAAAC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	1210
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
PspPI	GGNCC	4 cut(s)	118, 174, 728, 1129
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	289, 721
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	951
RsaNI	GTAC	1 cut(s)	950
RseI	CAYNNNNRTG	2 cut(s)	246, 1299
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	4 cut(s)	494, 789, 861, 999
SatI	GCNGC	4 cut(s)	132, 162, 912, 1274
Sau3AI	GATC	8 cut(s)	46, 250, 289, 560, 721, 813, 988, 1303
Sau96I	GGNCC	4 cut(s)	118, 174, 728, 1129
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	6 cut(s)	327, 672, 753, 1350, 1395, 1400
SduI	GDGCHC	1 cut(s)	461
SexAI	ACCWGGT	1 cut(s)	1348
SfaNI	GCATC	3 cut(s)	224, 418, 634
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	2 cut(s)	174, 728
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1299
SmlI	CTYRAG	1 cut(s)	732
SmoI	CTYRAG	1 cut(s)	732
Sse9I	AATT	6 cut(s)	143, 296, 362, 599, 992, 1024
SseBI	AGGCCT	2 cut(s)	66, 675
SsiI	CCGC	3 cut(s)	129, 795, 1274
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	461
StuI	AGGCCT	2 cut(s)	66, 675
StyD4I	CCNGG	6 cut(s)	325, 670, 751, 1348, 1393, 1398
TaaI	ACNGT	3 cut(s)	765, 936, 1012
TaqI	TCGA	1 cut(s)	98
TasI	AATT	6 cut(s)	143, 296, 362, 599, 992, 1024
TauI	GCSGC	1 cut(s)	1276
TfiI	GAWTC	3 cut(s)	77, 185, 1082
Tru1I	TTAA	4 cut(s)	494, 789, 861, 999
Tru9I	TTAA	4 cut(s)	494, 789, 861, 999
TscAI	CASTG	3 cut(s)	156, 402, 768
TseFI	GTSAC	3 cut(s)	105, 155, 257
TseI	GCWGC	3 cut(s)	131, 161, 911
Tsp45I	GTSAC	3 cut(s)	105, 155, 257
TspDTI	ATGAA	6 cut(s)	69, 230, 732, 1067, 1283, 1359
TspGWI	ACGGA	3 cut(s)	60, 469, 485
TspRI	CASTG	3 cut(s)	156, 402, 768
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	174, 728
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 1255
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	2 cut(s)	66, 1152
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.