Rh5CG202600
ERF Family

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001917
Physical Location & Seq
Forward (+)
20396996 .. 20397289
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG202600.1

Sequence Viewer

Length: 294 bp
ATGGCAGGTAGTGTCCTGCCATCTCTCGGTCATGTGAAGCTAGCTGATCTTGTACCTTCTGAAGGCCTTCCATCAGATTCTTACAAACTATCTGTTTCAACTTTGTCACAATCATTGGCCCAGTATTCCGCTGCCATTGTTCAATTTTCAGTGAGTGATGGAGCTCTTTTGAGGTCTGGTTTAGATTCTGCTCGCCTTTACTTCCATCAAAGAGCATCATGCCCAGCTCCCGACATTGTTCCTACGAATGACCTGGCTCGCCATTTACTGAAATACTTGCCAATGTTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.4

Weight (kDa)

6.89

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 26, 62
AgsI TTSAA 2 cut(s) 99, 143
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 4 cut(s) 40, 44, 164, 227
AluI AGCT 4 cut(s) 40, 44, 164, 227
Alw21I GWGCWC 1 cut(s) 166
AoxI GGCC 2 cut(s) 64, 117
ApeKI GCWGC 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 118
BccI CCATC 4 cut(s) 28, 79, 152, 213
BciT130I CCWGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 62
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 26, 62
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 66, 119
BsiHKAI GWGCWC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 26, 62
BsnI GGCC 2 cut(s) 66, 119
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 66, 119
BspOI GCTAGC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 42, 193, 259
BstENI CCTNNNNNAGG 1 cut(s) 60
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 2 cut(s) 66, 119
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 42, 193, 259
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 32, 219
CviJI RGCY 7 cut(s) 40, 44, 66, 119, 164, 227, 257
CviKI_1 RGCY 7 cut(s) 40, 44, 66, 119, 164, 227, 257
CviQI GTAC 1 cut(s) 53
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 164
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 2 cut(s) 35, 222
FaiI YATR 2 cut(s) 33, 220
FatI CATG 2 cut(s) 31, 218
Fnu4HI GCNGC 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 66, 119
Hin1II CATG 2 cut(s) 35, 222
HinfI GANTC 2 cut(s) 77, 185
Hpy188I TCNGA 2 cut(s) 61, 76
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 56, 66, 77
Hsp92II CATG 2 cut(s) 35, 222
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 161, 232
LpnPI CCDG 6 cut(s) 29, 134, 162, 237, 239, 266
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 143
MnlI CCTC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 35, 222
NmuCI GTSAC 1 cut(s) 105
PceI AGGCCT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 77, 185
PkrI GCNGC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 252
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 166
SetI ASST 8 cut(s) 10, 42, 46, 58, 166, 176, 229, 255
SfaNI GCATC 1 cut(s) 224
Sse9I AATT 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 166
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 252
TaqII GACCGA 1 cut(s) 17
TasI AATT 1 cut(s) 143
TfiI GAWTC 2 cut(s) 77, 185
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 105
TspRI CASTG 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.