Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

33287877 .. 33288164

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1151000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGAGATTTGGGTGGCCAAAACGAGGTGCCCATTTGTTCATTCCCATGATCTCCCCGACAAGGCAAAGATCGGTTTCCTTGAAGCCTATGAACCTGGTTGGACAGCTACTCATGATATGGAGTTAAGTCTAACTGAACCTGGACAGGCTGGCCAGTCAACACTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

57

Amino Acids

6.2

Weight (kDa)

5.04

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	15, 151
AfiI	CCNNNNNNNGG	2 cut(s)	24, 61
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	94, 139
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AoxI	GGCC	2 cut(s)	15, 151
BaeGI	GKGCMC	1 cut(s)	32
BalI	TGGCCA	2 cut(s)	17, 153
BanI	GGYRCC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	96, 141
Bme1390I	CCNGG	2 cut(s)	96, 141
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	96, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 61
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	96, 141
BseLI	CCNNNNNNNGG	2 cut(s)	24, 61
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	17, 153
BshNI	GGYRCC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	24, 61
BsnI	GGCC	2 cut(s)	17, 153
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	49, 69
BspANI	GGCC	2 cut(s)	17, 153
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	49, 69
Bst2UI	CCWGG	2 cut(s)	96, 141
BstC8I	GCNNGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	52, 72
BstMBI	GATC	2 cut(s)	49, 69
BstNI	CCWGG	2 cut(s)	96, 141
BstSCI	CCNGG	2 cut(s)	94, 139
BstSLI	GKGCMC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	17, 153
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	94
CviAII	CATG	2 cut(s)	47, 113
CviJI	RGCY	5 cut(s)	17, 86, 107, 149, 153
CviKI_1	RGCY	5 cut(s)	17, 86, 107, 149, 153
DpnI	GATC	2 cut(s)	51, 71
DpnII	GATC	2 cut(s)	49, 69
EaeI	YGGCCR	2 cut(s)	15, 151
EcoRII	CCWGG	2 cut(s)	94, 139
FaeI	CATG	2 cut(s)	50, 116
FaiI	YATR	4 cut(s)	48, 90, 114, 119
FatI	CATG	2 cut(s)	46, 112
HaeIII	GGCC	2 cut(s)	17, 153
Hin1II	CATG	2 cut(s)	50, 116
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	50, 116
Kzo9I	GATC	2 cut(s)	49, 69
LpnPI	CCDG	7 cut(s)	81, 108, 126, 131, 135, 153, 167
MabI	ACCWGGT	1 cut(s)	94
MalI	GATC	2 cut(s)	51, 71
MboI	GATC	2 cut(s)	49, 69
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	2 cut(s)	17, 153
MluNI	TGGCCA	2 cut(s)	17, 153
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	18
Mox20I	TGGCCA	2 cut(s)	17, 153
MscI	TGGCCA	2 cut(s)	17, 153
MseI	TTAA	2 cut(s)	125, 169
MslI	CAYNNNNRTG	1 cut(s)	45
Msp20I	TGGCCA	2 cut(s)	17, 153
MspR9I	CCNGG	2 cut(s)	96, 141
MvaI	CCWGG	2 cut(s)	96, 141
NdeII	GATC	2 cut(s)	49, 69
NlaIII	CATG	2 cut(s)	50, 116
NlaIV	GGNNCC	1 cut(s)	29
PagI	TCATGA	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	94, 139
PspGI	CCWGG	2 cut(s)	94, 139
PspN4I	GGNNCC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	125, 169
Sau3AI	GATC	2 cut(s)	49, 69
ScrFI	CCNGG	2 cut(s)	96, 141
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	4 cut(s)	29, 97, 109, 142
SexAI	ACCWGGT	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	94, 139
Tru1I	TTAA	2 cut(s)	125, 169
Tru9I	TTAA	2 cut(s)	125, 169
TspDTI	ATGAA	2 cut(s)	29, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.