Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

36460654 .. 36461258

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1230900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAAGTAATGGCCTGCCATCTCTAGGTCGTGTGAAGCTAACTGATCTGGCACCTGCTGAAGGCCTTCCATCAGATTCTTACAGACTATCTGTTTCAACTTTGTCACAATCACTAGCACTCTATTCTGCTGCCATCATTCAGTTTCCAGTGAGTGATGGGGCACTTTTGAGGTCGGGTTTAGATTCGGCTCGCCTCTACTTCCACCAGAAAGCATCATACCCAGCTGCAGATATGGTTAATAACAATGACCCTCGTGACTGGTGCAAGACTTCCGGTTATAATGCAGATCCTCAATTGTGGCTAGAAACCTATGATTACAGACCTGGACTCACTCCTTTAGAGCCCGACAACACAATGGAATTTGCTCCAGCAGCTTTACCAGATATATTTTCACTGCTTGCAAAGGCAGCTCGAGATATATTGGACACTATCAGCTTCTATTTGAACTTGAGGAGTTCACCATTTACTGAAGTACTTGATAATGTTCCCTTAAGAAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.49

Weight (kDa)

4.75

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	81, 492
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	26, 62
AflII	CTTAAG	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	99, 448
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	5 cut(s)	40, 227, 377, 413, 438
AluI	AGCT	5 cut(s)	40, 227, 377, 413, 438
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	2 cut(s)	13, 64
ApeKI	GCWGC	4 cut(s)	131, 227, 374, 410
ApoI	RAATTY	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	118, 214, 386, 422
BccI	CCATC	4 cut(s)	28, 79, 143, 152
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	3 cut(s)	26, 116, 305
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	493
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	132, 228, 375, 411
BlsI	GCNGC	4 cut(s)	133, 229, 376, 412
BmcAI	AGTACT	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 62
Bse1I	ACTGG	2 cut(s)	149, 266
BseBI	CCWGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	26, 62
BseNI	ACTGG	2 cut(s)	149, 266
BseRI	GAGGAG	1 cut(s)	469
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	118, 214, 386, 422
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	15, 66
BshNI	GGYRCC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	26, 62
BsnI	GGCC	2 cut(s)	15, 66
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	166, 348
Bsp143I	GATC	2 cut(s)	46, 289
BspANI	GGCC	2 cut(s)	15, 66
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	149, 266
BssMI	GATC	2 cut(s)	46, 289
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	17, 193, 402
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	49, 292
BstMBI	GATC	2 cut(s)	46, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 410
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	118, 214, 386, 422
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	15, 66
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	156, 395
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	17, 193, 402
Csp6I	GTAC	1 cut(s)	476
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	2 cut(s)	48, 291
DpnII	GATC	2 cut(s)	46, 289
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	348
Eco57I	CTGAAG	2 cut(s)	81, 492
Eco88I	CYCGRG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	348
FaiI	YATR	6 cut(s)	220, 236, 282, 315, 389, 422
Fnu4HI	GCNGC	4 cut(s)	132, 228, 375, 411
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	132, 228, 375, 411
FspBI	CTAG	3 cut(s)	26, 116, 305
GluI	GCNGC	4 cut(s)	132, 228, 375, 411
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	15, 66
HapII	CCGG	1 cut(s)	276
HinfI	GANTC	3 cut(s)	77, 185, 330
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	257, 416
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	56, 77
HpyCH4V	TGCA	4 cut(s)	230, 267, 287, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 410
Kzo9I	GATC	2 cut(s)	46, 289
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	4 cut(s)	118, 214, 386, 422
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	3 cut(s)	26, 116, 305
MaeIII	GTNAC	2 cut(s)	105, 257
MalI	GATC	2 cut(s)	48, 291
MboI	GATC	2 cut(s)	46, 289
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	166, 348
MluCI	AATT	2 cut(s)	296, 362
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	165, 206, 264, 303, 447
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	240, 494
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	493
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	374, 410
NdeII	GATC	2 cut(s)	46, 289
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	105, 257
PaeR7I	CTCGAG	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	77, 185
PkrI	GCNGC	4 cut(s)	133, 229, 376, 412
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	240, 494
SatI	GCNGC	4 cut(s)	132, 228, 375, 411
Sau3AI	GATC	2 cut(s)	46, 289
ScaI	AGTACT	1 cut(s)	477
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	166, 348
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	414, 451, 493
SmoI	CTYRAG	3 cut(s)	414, 451, 493
Sse9I	AATT	2 cut(s)	296, 362
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	3 cut(s)	26, 116, 305
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	325
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	296, 362
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	77, 185
Tru1I	TTAA	2 cut(s)	240, 494
Tru9I	TTAA	2 cut(s)	240, 494
TscAI	CASTG	2 cut(s)	156, 402
TseFI	GTSAC	2 cut(s)	105, 257
TseI	GCWGC	4 cut(s)	131, 227, 374, 410
Tsp45I	GTSAC	2 cut(s)	105, 257
TspRI	CASTG	2 cut(s)	156, 402
Vha464I	CTTAAG	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	26, 116, 305
ZrmI	AGTACT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.