Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

36461260 .. 36463681

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1231000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTTCTGACCATGAGCATCAAGTTGACAAAAGCTTGATATCTCTTGTCAAGTCAGACAAGGCTGGTCTACACATAAAGGACTTTCAGGGTCGTTGGGTTCTTGTGGAAGACGATCTTGGTCCTCAAGAAGCTATTGTTTACCCTGGACTCGCACTCTATCAGGCAACTGCAGGATATGTTAACCCTGCACTACAGAGAACGGAGACTGCTAATACACAGAGCAACTTGTTTAGGCGATGTTCTTTGGCTTTTAAATTCATGCCTAAATCCATGACCAGTCTTAGTTGTTCAGAGATGAGAGCTGCTGGTCATGGGGTTGAAGCTCAGTTCCAGCTTCCAGTAGCGGTTGATGACTTTATGCAGAGATCTCACCCCACCGATCAACTCTTTAACAGACACAGTTTCCAAAGTTCCAATTTCCATGCAGCACAAGATGGATCTATGAAGCCTTTGTTGAGGAGGAGAAAGAGTGAAAGAAACAAACCTCTGCCACCTTCCAAGAGATTATGGGTCGAGGCCCAGAGAGTCCTGAAGGAAAGGGTTCAAGACATTGCAGACAAGAAGGGAATCAAGCTGAGGTTCTGCAACGTGAAGGAGTGTGAAAATCACATTCAGACACTTGATAGCCCCCGTGCCAATATAAGAATGGAGATTGGGTGGCCAAACGGGGTGCCATTTGTTCATTCCCATGATCTCCCCAACAAGGCTATGAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.33

Weight (kDa)

9.32

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	323, 548
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	6 cut(s)	36, 134, 305, 326, 337, 577
AluI	AGCT	6 cut(s)	36, 134, 305, 326, 337, 577
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	519, 662
ApeKI	GCWGC	2 cut(s)	305, 428
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	122, 520
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	292, 440
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	171, 194
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	2 cut(s)	306, 429
BlsI	GCNGC	2 cut(s)	307, 430
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 520
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	457, 487, 644, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	279, 341
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	341, 569
BseNI	ACTGG	2 cut(s)	279, 341
BseRI	GAGGAG	2 cut(s)	475, 478
BseXI	GCAGC	2 cut(s)	292, 440
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	521, 664
BshNI	GGYRCC	1 cut(s)	673
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	521, 664
Bsp143I	GATC	5 cut(s)	115, 368, 382, 440, 694
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	521, 664
BspCNI	CTCAG	2 cut(s)	340, 570
BspLI	GGNNCC	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	279, 341
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	5 cut(s)	115, 368, 382, 440, 694
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	284, 327, 578
BstKTI	GATC	5 cut(s)	118, 371, 385, 443, 697
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	5 cut(s)	115, 368, 382, 440, 694
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	2 cut(s)	171, 194
BstV1I	GCAGC	2 cut(s)	292, 440
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	368, 440
BstYI	RGATCY	2 cut(s)	368, 440
BsuRI	GGCC	2 cut(s)	521, 664
BtgZI	GCGATG	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	122, 520
CviAII	CATG	6 cut(s)	14, 262, 274, 314, 425, 692
DdeI	CTNAG	3 cut(s)	284, 327, 578
DpnI	GATC	5 cut(s)	117, 370, 384, 442, 696
DpnII	GATC	5 cut(s)	115, 368, 382, 440, 694
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	42
FaeI	CATG	6 cut(s)	17, 265, 277, 317, 428, 695
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	6 cut(s)	13, 261, 273, 313, 424, 691
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	306, 429
Fsp4HI	GCNGC	2 cut(s)	306, 429
GluI	GCNGC	2 cut(s)	306, 429
HaeIII	GGCC	2 cut(s)	521, 664
Hin1II	CATG	6 cut(s)	17, 265, 277, 317, 428, 695
HincII	GTYRAC	2 cut(s)	28, 184
HindII	GTYRAC	2 cut(s)	28, 184
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	150, 528, 570
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	4 cut(s)	28, 71, 142, 184
Hpy188I	TCNGA	4 cut(s)	10, 58, 295, 618
Hpy188III	TCNNGA	3 cut(s)	128, 532, 548
Hpy8I	GTNNAC	4 cut(s)	28, 71, 142, 184
HpyAV	CCTTC	4 cut(s)	507, 529, 559, 589
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	6 cut(s)	173, 191, 364, 428, 557, 588
HpyF3I	CTNAG	3 cut(s)	284, 327, 578
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	6 cut(s)	17, 265, 277, 317, 428, 695
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	115, 368, 382, 440, 694
Lsp1109I	GCAGC	2 cut(s)	292, 440
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	591
MalI	GATC	5 cut(s)	117, 370, 384, 442, 696
MboI	GATC	5 cut(s)	115, 368, 382, 440, 694
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	2 cut(s)	368, 440
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	2 cut(s)	257, 418
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	144, 537
MnlI	CCTC	6 cut(s)	135, 453, 456, 498, 511, 573
Mox20I	TGGCCA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	3 cut(s)	183, 255, 393
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NdeII	GATC	5 cut(s)	115, 368, 382, 440, 694
NlaIII	CATG	6 cut(s)	17, 265, 277, 317, 428, 695
NlaIV	GGNNCC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	570
PkrI	GCNGC	2 cut(s)	307, 430
PleI	GAGTC	2 cut(s)	144, 536
PpsI	GAGTC	2 cut(s)	144, 536
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	122, 520
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	368, 440
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	183, 255, 393
SatI	GCNGC	2 cut(s)	306, 429
Sau3AI	GATC	5 cut(s)	115, 368, 382, 440, 694
Sau96I	GGNCC	2 cut(s)	122, 520
SchI	GAGTC	2 cut(s)	144, 537
ScrFI	CCNGG	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	171, 194
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	257, 418
SsiI	CCGC	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	516
TasI	AATT	2 cut(s)	257, 418
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	3 cut(s)	183, 255, 393
Tru9I	TTAA	3 cut(s)	183, 255, 393
TseI	GCWGC	2 cut(s)	305, 428
TspDTI	ATGAA	3 cut(s)	250, 461, 674
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.