Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

33286919 .. 33287875

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1150900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACCCTCGTGACTGGTCCTCAAGAAGCTATTGTTTACCCTGGACTCGCACTCTATCAGGCAACTGCAGGATATGTTAACCCTGCACTGCAGAGAACGGAGACTGCTAATACAACAGAGCAACTTGTTTTTGGGGCGTTAGATGAGAAACTGCTGGTCATGGGGTTTGAAGCTCAGTTCCAGCTTCCAGTAGCGGTTGATGACTTTATGCAGAGATCTCACCCCACCAATCAACTCTTTAACAGACACGGTTTCCAAAGTTCCAATTTCCATGCAGCACAAGATGGATCTATGAAGCCTTTGTTGAGGAGGAGAAAGGGTGAAAGAACCAAACCTCTGCCACCTTCCAAGAGATTGTGGGTCGAGGTCCAGAGAGTCCTGATGGAAGGGGTTCAAGACATTGCAGACAAGAAAGGGAATCAAGCTGAGGTTTCTGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.38

Weight (kDa)

8.05

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	170, 395
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	4 cut(s)	29, 173, 184, 425
AluI	AGCT	4 cut(s)	29, 173, 184, 425
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	17, 367
AsuHPI	GGTGA	2 cut(s)	212, 332
AvaII	GGWCC	2 cut(s)	17, 367
BauI	CACGAG	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	278, 376
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	66, 89
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	17, 367
BmgT120I	GGNCC	2 cut(s)	17, 367
BmrFI	CCNGG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bse1I	ACTGG	2 cut(s)	19, 188
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	188, 417
BseNI	ACTGG	2 cut(s)	19, 188
BseRI	GAGGAG	2 cut(s)	322, 325
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	215, 287
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	187, 418
BspMAI	CTGCAG	2 cut(s)	70, 93
BspPI	GGATC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	19, 188
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	215, 287
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	174, 426
BstKTI	GATC	2 cut(s)	218, 290
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	215, 287
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	2 cut(s)	66, 89
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	215, 287
BstYI	RGATCY	2 cut(s)	215, 287
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	17, 367
CviAII	CATG	2 cut(s)	160, 272
CviJI	RGCY	5 cut(s)	29, 173, 184, 298, 425
CviKI_1	RGCY	5 cut(s)	29, 173, 184, 298, 425
DdeI	CTNAG	2 cut(s)	174, 426
DpnI	GATC	2 cut(s)	217, 289
DpnII	GATC	2 cut(s)	215, 287
Eco47I	GGWCC	2 cut(s)	17, 367
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	163, 275
FaiI	YATR	5 cut(s)	75, 161, 209, 273, 293
FatI	CATG	2 cut(s)	159, 271
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	163, 275
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	45, 375, 418
HpaI	GTTAAC	1 cut(s)	79
HphI	GGTGA	2 cut(s)	212, 332
Hpy166II	GTNNAC	2 cut(s)	37, 79
Hpy188III	TCNNGA	5 cut(s)	10, 23, 370, 379, 395
Hpy8I	GTNNAC	2 cut(s)	37, 79
HpyAV	CCTTC	2 cut(s)	354, 380
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	68, 86, 91, 211, 275, 404, 437
HpyF3I	CTNAG	2 cut(s)	174, 426
Hsp92II	CATG	2 cut(s)	163, 275
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	215, 287
Lsp1109I	GCAGC	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	217, 289
MboI	GATC	2 cut(s)	215, 287
MflI	RGATCY	2 cut(s)	215, 287
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	2 cut(s)	39, 384
MnlI	CCTC	7 cut(s)	17, 30, 300, 303, 345, 358, 421
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	78, 240
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	215, 287
NlaIII	CATG	2 cut(s)	163, 275
NmuCI	GTSAC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	39, 383
PpsI	GAGTC	2 cut(s)	39, 383
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	17, 367
PstI	CTGCAG	2 cut(s)	70, 93
PsuI	RGATCY	2 cut(s)	215, 287
SaqAI	TTAA	2 cut(s)	78, 240
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	215, 287
Sau96I	GGNCC	2 cut(s)	17, 367
SchI	GAGTC	2 cut(s)	39, 384
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	9 cut(s)	31, 175, 186, 337, 346, 369, 427, 432, 443
SfcI	CTRYAG	2 cut(s)	66, 89
SinI	GGWCC	2 cut(s)	17, 367
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	78, 240
Tru9I	TTAA	2 cut(s)	78, 240
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	17, 367
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.