Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Reverse (-)

8233860 .. 8237359

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTTCTTATATATACGCAAGCGGTGAGATTAATCATCAATAAGAACTTGTTCTCTGAGTTTGGAGCAATGGAAGAATTAGCAAAGCTAGGGAGCTCTCTTCCGGTGCCTTGTGTTCAGGAGCTTGCGAAAGAGCCATTAACTACAGTCCCACACCGATATGTTCGCCCTGATCAAGATCCTCCCTTCATTTCTGGTATGGCCACTTCTTCACCTCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGAAGAAACCATGCCAGCAGAGTTGCAGGAGTTCCACCTTGCTTGCAGAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTTGGTGAAACTTTGTTGGAGAGTGTGAAGTCAGGGATTCAAGAATTCTTCAGTCTGCCAATGGAAGAGAAGAAACAGTTTTGGCAGCAGCCAGAAATTATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTGATTGGTCAGACATATTCTACTTGATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTCCCCAATATTCCTCAACCACTAAGAGATAACTTAGAAGTGTACTCTGCGGAACTAGAAGATCTTGCCAAGAAGATTCTTGACCTCATGGCAAAAGCACTGGGAGTGGATGCTAACTATATAAAAGAGTTGTTTGACCAAGGGACTCAGATGTTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATGCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAATGGTATGTGGATTCCGATTAAGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

32.25

Weight (kDa)

5.08

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	74 - 182	1.1e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 274	2.3e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	2 cut(s)	23, 590
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	2 cut(s)	367, 794
AfaI	GTAC	2 cut(s)	222, 584
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	5 cut(s)	88, 96, 124, 319, 733
AluI	AGCT	5 cut(s)	88, 96, 124, 319, 733
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	201, 742, 805
ApeKI	GCWGC	2 cut(s)	418, 421
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	50, 807
AsuHPI	GGTGA	3 cut(s)	37, 204, 350
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	1 cut(s)	785
BclI	TGATCA	2 cut(s)	172, 504
BfaI	CTAG	2 cut(s)	89, 596
BfmI	CTRYAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	2 cut(s)	419, 422
BlsI	GCNGC	2 cut(s)	420, 423
BmiI	GGNNCC	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	2 cut(s)	640, 751
BmuI	ACTGGG	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	679
BsaWI	WCCGGW	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	224, 645
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	3 cut(s)	655, 705, 777
BseJI	GATNNNNATC	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	4 cut(s)	48, 456, 701, 771
BseNI	ACTGG	2 cut(s)	224, 645
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	430, 433
BshFI	GGCC	3 cut(s)	203, 744, 807
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	134, 697
BsmFI	GGGAC	2 cut(s)	134, 697
BsnI	GGCC	3 cut(s)	203, 744, 807
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	5 cut(s)	172, 178, 228, 504, 601
BspACI	CCGC	2 cut(s)	23, 590
BspANI	GGCC	3 cut(s)	203, 744, 807
BspCNI	CTCAG	4 cut(s)	49, 457, 700, 770
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	224, 645
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	5 cut(s)	172, 178, 228, 504, 601
BssT1I	CCWWGG	1 cut(s)	679
Bst4CI	ACNGT	2 cut(s)	148, 411
Bst6I	CTCTTC	2 cut(s)	105, 393
BstC8I	GCNNGC	4 cut(s)	21, 126, 267, 295
BstDEI	CTNAG	6 cut(s)	57, 465, 563, 574, 687, 757
BstF5I	GGATG	3 cut(s)	655, 705, 777
BstKTI	GATC	5 cut(s)	175, 181, 231, 507, 604
BstMBI	GATC	5 cut(s)	172, 178, 228, 504, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	430, 433
BstX2I	RGATCY	2 cut(s)	178, 601
BstYI	RGATCY	2 cut(s)	178, 601
BsuRI	GGCC	3 cut(s)	203, 744, 807
BtsCI	GGATG	3 cut(s)	655, 705, 777
BtsIMutI	CAGTG	2 cut(s)	231, 638
Cac8I	GCNNGC	4 cut(s)	21, 126, 267, 295
CaiI	CAGNNNCTG	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	221, 583
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	5 cut(s)	235, 262, 329, 628, 717
CviQI	GTAC	2 cut(s)	221, 583
DdeI	CTNAG	6 cut(s)	57, 465, 563, 574, 687, 757
DpnI	GATC	5 cut(s)	174, 180, 230, 506, 603
DpnII	GATC	5 cut(s)	172, 178, 228, 504, 601
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	105, 393
EarI	CTCTTC	2 cut(s)	105, 393
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	367, 794
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	5 cut(s)	238, 265, 332, 631, 720
FaqI	GGGAC	2 cut(s)	134, 697
FatI	CATG	5 cut(s)	234, 261, 328, 627, 716
FbaI	TGATCA	2 cut(s)	172, 504
Fnu4HI	GCNGC	2 cut(s)	419, 422
FokI	GGATG	3 cut(s)	662, 712, 764
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	419, 422
FspBI	CTAG	2 cut(s)	89, 596
GluI	GCNGC	2 cut(s)	419, 422
HaeIII	GGCC	3 cut(s)	203, 744, 807
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	5 cut(s)	238, 265, 332, 631, 720
HinfI	GANTC	4 cut(s)	370, 616, 685, 834
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	37, 204, 350
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	7 cut(s)	58, 253, 466, 490, 690, 760, 839
Hpy188III	TCNNGA	4 cut(s)	119, 176, 374, 620
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	3 cut(s)	196, 797, 818
HpyCH4III	ACNGT	2 cut(s)	148, 411
HpyCH4V	TGCA	2 cut(s)	277, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	6 cut(s)	57, 465, 563, 574, 687, 757
Hsp92II	CATG	5 cut(s)	238, 265, 332, 631, 720
Ksp22I	TGATCA	2 cut(s)	172, 504
Kzo9I	GATC	5 cut(s)	172, 178, 228, 504, 601
LmnI	GCTCC	3 cut(s)	65, 93, 121
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	2 cut(s)	640, 751
MaeI	CTAG	2 cut(s)	89, 596
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	5 cut(s)	174, 180, 230, 506, 603
MboI	GATC	5 cut(s)	172, 178, 228, 504, 601
MflI	RGATCY	2 cut(s)	178, 601
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	3 cut(s)	77, 377, 429
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	2 cut(s)	330, 748
MnlI	CCTC	9 cut(s)	192, 225, 430, 519, 564, 635, 762, 791, 794
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	2 cut(s)	50, 807
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	4 cut(s)	32, 140, 747, 842
MslI	CAYNNNNRTG	2 cut(s)	159, 759
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	730
NdeII	GATC	5 cut(s)	172, 178, 228, 504, 601
NlaIII	CATG	5 cut(s)	238, 265, 332, 631, 720
NlaIV	GGNNCC	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	807
PdmI	GAANNNNTTC	2 cut(s)	50, 807
PfeI	GAWTC	3 cut(s)	370, 616, 834
PkrI	GCNGC	2 cut(s)	420, 423
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	178, 601
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	222, 584
RsaNI	GTAC	2 cut(s)	221, 583
RseI	CAYNNNNRTG	2 cut(s)	159, 759
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	32, 140, 747, 842
SatI	GCNGC	2 cut(s)	419, 422
Sau3AI	GATC	5 cut(s)	172, 178, 228, 504, 601
SchI	GAGTC	1 cut(s)	679
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	9 cut(s)	90, 98, 126, 217, 291, 321, 627, 735, 816
SfaNI	GCATC	2 cut(s)	640, 751
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	159, 759
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	77, 377, 429
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	2 cut(s)	23, 590
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	89, 596
SstI	GAGCTC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	807
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	148, 411
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	77, 377, 429
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	3 cut(s)	370, 616, 834
Tru1I	TTAA	4 cut(s)	32, 140, 747, 842
Tru9I	TTAA	4 cut(s)	32, 140, 747, 842
TscAI	CASTG	2 cut(s)	231, 645
TseI	GCWGC	2 cut(s)	418, 421
TspDTI	ATGAA	4 cut(s)	178, 251, 716, 810
TspRI	CASTG	2 cut(s)	231, 645
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	2 cut(s)	50, 807
XspI	CTAG	2 cut(s)	89, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.