Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Reverse (-)

23037320 .. 23037964

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAGGTAATGGCCTGCCATCTCTAGGTCGTGTGAAGCTAACTGATCTGGCACCTGCTGAAGGCCTTCCATCAGATTCTTACAAACAATCTGTTTCAACTTTGTCACAATCACTAGCACTCTATTCTGCTGCCATCATTCAGTTTCCAGTGAGTGATGGGGCTCTTTTGATGTCGGGTTTAGATTCAGCTCGCCTCTACTTCCACCAGAAAGCATCATCCCCAGCTGCAGATATGGTTAATAACAATGACCCTCGTGACTGTTGCAAGACTTCCGGTTATAACGCAGATCCTCAATTGTGGCTAGAAACGTATGATTGCAGACCTGGACTCCCTCCTTTAGAGCCCAACAACACAACGGAATTTCCTCCAGCAGCTTTACCAGATATATTTTCACTGCTTGCAAAGGCAGCTCGAGATATTTTGGACGCTATCAGCTTCTATTTGAACTTGAGGAGCTCACCATTTACTGAAGTACTGATAATGTTCCCGTATGAAACCGGTAAATATCTTCTTCAGTATTATCTGTCTGTTGTCATGCAAGGCCATCATTTCAGGGGACACGACACCATAGTTTTACGACCCAAGAGGATGGCCAGTTGGTTATGTTTTCTGACCATGAGCATCAAGTTGACAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.6

Weight (kDa)

6.4

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	3 cut(s)	81, 492, 500
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	26, 62
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	99, 448
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	8 cut(s)	40, 191, 227, 377, 413, 438, 459, 641
AluI	AGCT	8 cut(s)	40, 191, 227, 377, 413, 438, 459, 641
Alw21I	GWGCWC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	4 cut(s)	13, 64, 544, 594
ApeKI	GCWGC	4 cut(s)	131, 227, 374, 410
ApoI	RAATTY	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	3 cut(s)	166, 348, 461
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	118, 214, 386, 422
BccI	CCATC	6 cut(s)	28, 79, 143, 152, 555, 586
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	3 cut(s)	26, 116, 305
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	132, 228, 375, 411
BlsI	GCNGC	4 cut(s)	133, 229, 376, 412
BmcAI	AGTACT	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	224, 633
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	472
BsaWI	WCCGGW	2 cut(s)	275, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 62
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	149, 597
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	218, 597
BseLI	CCNNNNNNNGG	2 cut(s)	26, 62
BseNI	ACTGG	2 cut(s)	149, 597
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	118, 214, 386, 422
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	4 cut(s)	15, 66, 546, 596
BshNI	GGYRCC	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	276, 501
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	26, 62
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	4 cut(s)	15, 66, 546, 596
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	166, 348, 461
Bsp143I	GATC	2 cut(s)	46, 289
BspANI	GGCC	4 cut(s)	15, 66, 546, 596
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	149, 597
BssAI	RCCGGY	1 cut(s)	500
BssMI	GATC	2 cut(s)	46, 289
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	17, 193, 402
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	218, 597
BstKTI	GATC	2 cut(s)	49, 292
BstMBI	GATC	2 cut(s)	46, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	118, 214, 386, 422
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	15, 66, 546, 596
BtsCI	GGATG	2 cut(s)	218, 597
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	156, 395
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	17, 193, 402
Cfr10I	RCCGGY	1 cut(s)	500
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	476
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	2 cut(s)	538, 619
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	2 cut(s)	48, 291
DpnII	GATC	2 cut(s)	46, 289
EaeI	YGGCCR	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	3 cut(s)	166, 348, 461
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	81, 492, 500
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	3 cut(s)	166, 348, 461
FaeI	CATG	2 cut(s)	541, 622
FaiI	YATR	9 cut(s)	236, 282, 315, 389, 495, 539, 572, 607, 620
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	2 cut(s)	537, 618
Fnu4HI	GCNGC	4 cut(s)	132, 228, 375, 411
FokI	GGATG	2 cut(s)	205, 604
FriOI	GRGCYC	3 cut(s)	166, 348, 461
Fsp4HI	GCNGC	4 cut(s)	132, 228, 375, 411
FspBI	CTAG	3 cut(s)	26, 116, 305
GluI	GCNGC	4 cut(s)	132, 228, 375, 411
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	15, 66, 546, 596
HapII	CCGG	2 cut(s)	276, 501
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	541, 622
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	77, 185, 330
HpaII	CCGG	2 cut(s)	276, 501
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	2 cut(s)	76, 615
Hpy188III	TCNNGA	2 cut(s)	257, 416
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	2 cut(s)	56, 77
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	230, 267, 321, 404, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	541, 622
Kzo9I	GATC	2 cut(s)	46, 289
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	4 cut(s)	118, 214, 386, 422
LweI	GCATC	2 cut(s)	224, 633
MaeI	CTAG	3 cut(s)	26, 116, 305
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	105, 257
MalI	GATC	2 cut(s)	48, 291
MboI	GATC	2 cut(s)	46, 289
MboII	GAAGA	2 cut(s)	503, 506
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	166, 348, 461
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	2 cut(s)	296, 362
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	206, 264, 303, 345, 378, 447, 582
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	276, 501
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	46, 289
NlaIII	CATG	2 cut(s)	541, 622
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	105, 257
PaeR7I	CTCGAG	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	77, 185
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	133, 229, 376, 412
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	132, 228, 375, 411
Sau3AI	GATC	2 cut(s)	46, 289
ScaI	AGTACT	1 cut(s)	477
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	3 cut(s)	166, 348, 461
SfaNI	GCATC	2 cut(s)	224, 633
SfcI	CTRYAG	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	414, 451
SmoI	CTYRAG	2 cut(s)	414, 451
Sse9I	AATT	2 cut(s)	296, 362
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	3 cut(s)	26, 116, 305
SstI	GAGCTC	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	296, 362
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	77, 185
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	156, 402
TseFI	GTSAC	2 cut(s)	105, 257
TseI	GCWGC	4 cut(s)	131, 227, 374, 410
Tsp45I	GTSAC	2 cut(s)	105, 257
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	156, 402
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	26, 116, 305
ZrmI	AGTACT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.