Rorug05G0093400
ERF Family

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001917
Physical Location & Seq
Forward (+)
8248310 .. 8250869
2560 bp
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UTR
Exon/CDS
Intron
Rorug05G0093400.1

Sequence Viewer

Length: 288 bp
ATGGTGGGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCGGTAGAGCAAGTGGGTGGAATTTATGTTGTTACAGCTGATCATGGTAATGCCGAGGATATGGTGAAGAGAAATAAGACCGGGCAACCTCTTCTTGACAAGAGTGGCAACATCCAAATCCTTACCTCCCACACTCTTCAACCAGTTCCCAGATCCAATCGGGCGAGATTTCAATTTCGAAGCAACTCCGAAAGGCATTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.43

Weight (kDa)

7.97

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metalloenzyme PF01676 1 - 77 2.4e-22 Metalloenzyme superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 102
AgsI TTSAA 2 cut(s) 221, 254
AluBI AGCT 2 cut(s) 62, 119
AluI AGCT 2 cut(s) 62, 119
AlwI GGATC 1 cut(s) 228
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 29, 157
AsuII TTCGAA 1 cut(s) 259
BbvI GCAGC 1 cut(s) 37
BclI TGATCA 2 cut(s) 55, 121
BcnI CCSGG 1 cut(s) 163
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 19, 224
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 19, 224
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 162
BsnI GGCC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 55, 121, 233
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 29
BspPI GGATC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 259
BsrI ACTGG 2 cut(s) 19, 224
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 3 cut(s) 55, 121, 233
Bst6I CTCTTC 3 cut(s) 143, 177, 222
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 3 cut(s) 58, 124, 236
BstMBI GATC 3 cut(s) 55, 121, 233
BstMWI GCNNNNNNNGC 2 cut(s) 47, 59
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 1 cut(s) 125
CviJI RGCY 4 cut(s) 29, 50, 62, 119
CviKI_1 RGCY 4 cut(s) 29, 50, 62, 119
DpnI GATC 3 cut(s) 57, 123, 235
DpnII GATC 3 cut(s) 55, 121, 233
Eam1104I CTCTTC 3 cut(s) 143, 177, 222
EarI CTCTTC 3 cut(s) 143, 177, 222
FaeI CATG 1 cut(s) 128
FaiI YATR 4 cut(s) 12, 108, 126, 143
FatI CATG 1 cut(s) 124
FbaI TGATCA 2 cut(s) 55, 121
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 162
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 73
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 29, 157
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 67, 77, 176
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 59
Hsp92II CATG 1 cut(s) 128
Ksp22I TGATCA 2 cut(s) 55, 121
Kzo9I GATC 3 cut(s) 55, 121, 233
LpnPI CCDG 3 cut(s) 175, 237, 244
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 17, 112
MalI GATC 3 cut(s) 57, 123, 235
MboI GATC 3 cut(s) 55, 121, 233
MboII GAAGA 3 cut(s) 160, 164, 209
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 233
MluCI AATT 3 cut(s) 33, 102, 254
MnlI CCTC 4 cut(s) 19, 130, 180, 217
MslI CAYNNNNRTG 2 cut(s) 15, 129
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 47, 59
NciI CCSGG 1 cut(s) 163
NdeII GATC 3 cut(s) 55, 121, 233
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 119
RseI CAYNNNNRTG 2 cut(s) 15, 129
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 55, 121, 233
ScrFI CCNGG 1 cut(s) 163
SetI ASST 4 cut(s) 64, 121, 172, 209
SfaNI GCATC 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 15, 129
Sse9I AATT 3 cut(s) 33, 102, 254
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 259
TasI AATT 3 cut(s) 33, 102, 254
TfiI GAWTC 1 cut(s) 73
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 17
XapI RAATTY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.