Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

36474275 .. 36474458

Gene Structure 184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1231200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCAAGTAATGGCCTGCCATCTCTAGGTCGTGTGAAGCTAACTGATCTGGCACCTGCTGAAGGCCTTCCATCAGAATCTTACAAACTATCCGTTTCAACTTTGTCACAATCACTAGCACTCTATTCTGCTGCCATCATTCAGTTTTCCAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

53

Amino Acids

5.4

Weight (kDa)

5.06

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	26, 62
AgsI	TTSAA	1 cut(s)	99
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AoxI	GGCC	2 cut(s)	13, 64
ApeKI	GCWGC	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	28, 79, 143
BfaI	CTAG	2 cut(s)	26, 116
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 62
Bse1I	ACTGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	26, 62
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	2 cut(s)	15, 66
BshNI	GGYRCC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	26, 62
BsnI	GGCC	2 cut(s)	15, 66
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	15, 66
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	15, 66
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	17
CviJI	RGCY	3 cut(s)	15, 40, 66
CviKI_1	RGCY	3 cut(s)	15, 40, 66
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	26, 116
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	15, 66
HinfI	GANTC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	56, 77
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	29, 35, 69
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	26, 116
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	66
NdeII	GATC	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	54
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	46
SetI	ASST	3 cut(s)	31, 42, 58
SgeI	CNNG	7 cut(s)	18, 28, 38, 44, 62, 68, 128
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	2 cut(s)	26, 116
StuI	AGGCCT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	26, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.