Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Forward (+)

36522542 .. 36524057

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1232200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTTAATAACAATGACCCTTGTGACTGGTGCAAGACCTCCGGTTGTAATGCAGATCCTCCATTGTGGCTAGAAACCTATGATTACAGACCTGGACTCACTCCTTTAGAGCCCGACAACACAATGGAATTTCCTCCAGCAGCTTTACCTGATATATTTTCACTGCTTGCAAAGGCAGCTCGAGATATATTGGACGCTATCAGCTTCTATTTGAACTTGAGGAGCTCACCATTTACTGAAGTACTTGATAATGTTCCCTTAAGAAACCGGCCATCATTTCAGGGGACACAACACCATAGTTTTACGACCCAAGAGGATGGCCAGTTGGTTATGTTTTCTGACCATGAGCATCAAGTTGACAAAAGCTTGATATCTCTTGTCAAGTCAGACAAGGCTGGTCTACACATAAAGGACTTTCAGGGTCGTTGGTTTCTTGTGGACGAAGATCTTGGTCCTCAAGAAGCTATTGTTTACCCTGGACTCGCACTCTATCAGGCAACTGCAGGATATGTTAACCCTGCACTGCAGAGAACGGAGACTGCTAATACACAGAGCAACTTGTTTGGTTGTTCAGAGATGAGAGCTGCTGGTAATGGGGTTGAAGCTCAGTTCCAGCTTCCAGTAGCGGTTGATGACTTTATGCAGAGATCTCACCCCACCAATCAACTCTTTAACAGACACAGTTTCCAAAGTTCCAATTTCCATGCAGCACAAGATGAATCTAAGGAGCCTTTGTTGAGGAGGAGAAAGAGTGAAAGAACCAAACCTCTGCCACCTTCCAAGAGATTATGGGTCGAGGCACAGAGAGTCCTGAAGGAATGGGTTCAAGACATTGCAGACAAGAAGAGAATCAAGCTGAGGTTGTGCAACCTGAAGGAGTGTGAGAATCAAATTCAGACACTTGATAGCCCCTGTGCCAATATAAGAATGGAGATTGGGTGGCCACACGGGTGCCATTTGTTCATCCCCATGATCTCCCCAACAAGGCAAAGATCGGTTTCCTTGAAGCCGATGAGCCTGGTTGGACAGCTACTCATGATATGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

39.69

Weight (kDa)

6.21

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	951
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	3 cut(s)	269, 319, 941
AcsI	RAATTY	2 cut(s)	128, 891
AcuI	CTGAAG	3 cut(s)	258, 833, 893
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	984
AflII	CTTAAG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	214, 602, 827, 1006
AjnI	CCWGG	3 cut(s)	91, 475, 1017
AleI	CACNNNNGTG	1 cut(s)	949
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	3 cut(s)	269, 319, 941
ApeKI	GCWGC	4 cut(s)	140, 176, 584, 707
ApoI	RAATTY	2 cut(s)	128, 891
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	219, 644
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	452
BalI	TGGCCA	2 cut(s)	321, 943
BanI	GGYRCC	1 cut(s)	951
BanII	GRGCYC	2 cut(s)	114, 227
Bbv12I	GWGCWC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	857
BbvI	GCAGC	4 cut(s)	152, 188, 571, 719
BccI	CCATC	2 cut(s)	280, 311
BciT130I	CCWGG	3 cut(s)	93, 477, 1019
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	501, 524
BfrI	CTTAAG	1 cut(s)	259
BglII	AGATCT	2 cut(s)	445, 647
BisI	GCNGC	4 cut(s)	141, 177, 585, 708
BlsI	GCNGC	4 cut(s)	142, 178, 586, 709
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	3 cut(s)	93, 477, 1019
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	729, 953
BmrFI	CCNGG	3 cut(s)	93, 477, 1019
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	2 cut(s)	238, 441
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	6 cut(s)	719, 736, 749, 766, 923, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	984
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	3 cut(s)	32, 322, 620
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	3 cut(s)	93, 477, 1019
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	322, 963
BseLI	CCNNNNNNNGG	1 cut(s)	984
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	620, 848
BseNI	ACTGG	3 cut(s)	32, 322, 620
BseRI	GAGGAG	3 cut(s)	235, 754, 757
BseXI	GCAGC	4 cut(s)	152, 188, 571, 719
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	3 cut(s)	271, 321, 943
BshNI	GGYRCC	1 cut(s)	951
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	42, 268
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	984
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	271, 321, 943
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	114, 227
Bsp143I	GATC	5 cut(s)	55, 445, 647, 972, 992
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	3 cut(s)	271, 321, 943
BspCNI	CTCAG	2 cut(s)	619, 849
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	2 cut(s)	729, 953
BspMAI	CTGCAG	2 cut(s)	505, 528
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	951
BspTI	CTTAAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	831
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	32, 322, 620
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	5 cut(s)	55, 445, 647, 972, 992
Bst2UI	CCWGG	3 cut(s)	93, 477, 1019
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	1 cut(s)	839
BstAFI	CTTAAG	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	606, 723, 857
BstF5I	GGATG	2 cut(s)	322, 963
BstKTI	GATC	5 cut(s)	58, 448, 650, 975, 995
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	5 cut(s)	55, 445, 647, 972, 992
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	3 cut(s)	93, 477, 1019
BstSCI	CCNGG	3 cut(s)	91, 475, 1017
BstSFI	CTRYAG	2 cut(s)	501, 524
BstV1I	GCAGC	4 cut(s)	152, 188, 571, 719
BstX2I	RGATCY	3 cut(s)	55, 445, 647
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	3 cut(s)	55, 445, 647
BsuRI	GGCC	3 cut(s)	271, 321, 943
BtsCI	GGATG	2 cut(s)	322, 963
BtsI	GCAGTG	2 cut(s)	161, 521
BtsIMutI	CAGTG	2 cut(s)	161, 521
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	1035
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	344, 704, 970, 1036
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	606, 723, 857
DpnI	GATC	5 cut(s)	57, 447, 649, 974, 994
DpnII	GATC	5 cut(s)	55, 445, 647, 972, 992
EaeI	YGGCCR	3 cut(s)	269, 319, 941
Eam1104I	CTCTTC	1 cut(s)	839
EarI	CTCTTC	1 cut(s)	839
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	114, 227
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	3 cut(s)	258, 833, 893
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	91, 475, 1017
EcoRV	GATATC	1 cut(s)	372
EcoT38I	GRGCYC	2 cut(s)	114, 227
FaeI	CATG	4 cut(s)	347, 707, 973, 1039
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	4 cut(s)	343, 703, 969, 1035
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	141, 177, 585, 708
FokI	GGATG	2 cut(s)	329, 950
FriOI	GRGCYC	2 cut(s)	114, 227
Fsp4HI	GCNGC	4 cut(s)	141, 177, 585, 708
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	4 cut(s)	141, 177, 585, 708
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	271, 321, 943
HapII	CCGG	2 cut(s)	42, 268
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	347, 707, 973, 1039
HincII	GTYRAC	2 cut(s)	358, 514
HindII	GTYRAC	2 cut(s)	358, 514
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	6 cut(s)	96, 480, 719, 807, 849, 886
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	42, 268
HphI	GGTGA	2 cut(s)	219, 644
Hpy166II	GTNNAC	5 cut(s)	358, 401, 439, 472, 514
Hpy188I	TCNGA	4 cut(s)	340, 388, 574, 897
Hpy188III	TCNNGA	5 cut(s)	182, 458, 811, 827, 1036
Hpy8I	GTNNAC	5 cut(s)	358, 401, 439, 472, 514
HpyAV	CCTTC	3 cut(s)	786, 808, 868
HpyCH4III	ACNGT	1 cut(s)	683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	606, 723, 857
Hsp92II	CATG	4 cut(s)	347, 707, 973, 1039
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	55, 445, 647, 972, 992
LmnI	GCTCC	2 cut(s)	222, 727
Lsp1109I	GCAGC	4 cut(s)	152, 188, 571, 719
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	5 cut(s)	57, 447, 649, 974, 994
MboI	GATC	5 cut(s)	55, 445, 647, 972, 992
MboII	GAAGA	2 cut(s)	455, 856
MflI	RGATCY	3 cut(s)	55, 445, 647
MhlI	GDGCHC	2 cut(s)	114, 227
MlsI	TGGCCA	2 cut(s)	321, 943
MluCI	AATT	3 cut(s)	128, 697, 891
MluNI	TGGCCA	2 cut(s)	321, 943
MlyI	GAGTC	3 cut(s)	90, 474, 816
MmeI	TCCRAC	1 cut(s)	1003
Mox20I	TGGCCA	2 cut(s)	321, 943
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	2 cut(s)	321, 943
MseI	TTAA	5 cut(s)	6, 260, 513, 672, 1048
MslI	CAYNNNNRTG	2 cut(s)	949, 968
Msp20I	TGGCCA	2 cut(s)	321, 943
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	2 cut(s)	42, 268
MspR9I	CCNGG	3 cut(s)	93, 477, 1019
MvaI	CCWGG	3 cut(s)	93, 477, 1019
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	5 cut(s)	55, 445, 647, 972, 992
NlaIII	CATG	4 cut(s)	347, 707, 973, 1039
NlaIV	GGNNCC	2 cut(s)	729, 953
NmuCI	GTSAC	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	949
PaeR7I	CTCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	1035
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	719, 849, 886
PkrI	GCNGC	4 cut(s)	142, 178, 586, 709
PleI	GAGTC	3 cut(s)	90, 474, 815
PpsI	GAGTC	3 cut(s)	90, 474, 815
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	3 cut(s)	91, 475, 1017
PspGI	CCWGG	3 cut(s)	91, 475, 1017
PspN4I	GGNNCC	2 cut(s)	729, 953
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	505, 528
PsuI	RGATCY	3 cut(s)	55, 445, 647
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	949, 968
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	6, 260, 513, 672, 1048
SatI	GCNGC	4 cut(s)	141, 177, 585, 708
Sau3AI	GATC	5 cut(s)	55, 445, 647, 972, 992
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	3 cut(s)	90, 474, 816
ScrFI	CCNGG	3 cut(s)	93, 477, 1019
SduI	GDGCHC	2 cut(s)	114, 227
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	501, 524
Sfr274I	CTCGAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	949, 968
SmlI	CTYRAG	4 cut(s)	180, 217, 259, 456
SmoI	CTYRAG	4 cut(s)	180, 217, 259, 456
Sse9I	AATT	3 cut(s)	128, 697, 891
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	91, 475, 1017
TaaI	ACNGT	1 cut(s)	683
TaqI	TCGA	2 cut(s)	181, 795
TasI	AATT	3 cut(s)	128, 697, 891
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	719, 849, 886
Tru1I	TTAA	5 cut(s)	6, 260, 513, 672, 1048
Tru9I	TTAA	5 cut(s)	6, 260, 513, 672, 1048
TscAI	CASTG	2 cut(s)	168, 528
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	140, 176, 584, 707
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	732, 952
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	168, 528
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	128, 891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.