Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001917

Physical Location & Seq

Genomic Coordinates Reverse (-)

8262352 .. 8264249

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0093500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTGAAGATCGTCTTGTTCTTTCTGTCTGTGAGTTGTTCATTCATGGCTGCTGCTTCAGCTGGTAATTTCTACCGGGATTTCGACCTAACTTGGGGTGACCATCGAGCTAAGATACTCGACGGAGGAAACCTCCTCACTCTTTCTCTGGACCAAATCTCTGGCTCTGGGTTTCAGTCCAAGAGAGAATATCTTTTCGGCAGAATCGACATGCAGCTTAAGCTTGTCGCCGGCAACTCCGCCGGCACCGTCACCGCTTACTATTTGTCTTCAGAAGGGCCGAATCACGATGAGATTGATTTTGAGTTTTTGGGGAACTTGAGTGGAGATCCTTATATTGTCCATACGAACGTTTATACACAAGGGAAAGGGGGTAGAGAGCAACAATTCTACCTATGGTTCGACCCAACAAAAAACTTTCACACATACTCAATCCTTTGGAATCCCCAACGTATCATATTCTTGGTGGATAACACACCCATACGAGTGTTCAACAACGAGGAATCAATTGGAGTTGGCTTCCCCAAGAAGCAACCCATGAAGCTCTACTCGAGTCTCTGGAACGCGGACCAATGGGCAACAAAAGGCGGGCTAATCAAAACCGACTGGTCCAAGGCTCCATTCACAGCCTACTACAAAAGCTTCAACGCCAATGCCTGTGTTTGGTCTCGGGGTTCTTCATCGTGTGCCAACTCCAAAAGTACCCCAACACCGGATGGCTTCGGCATCAACAACAACAATGGTTGGCAGACTCAAGGGCTTAATGCACCCGGTCGAAGAAGACTGAGATGGGTGCAGAGGTACTACATGATTTATAACTATTGCACTGATTTGAAGCGATTCCCTCAGGGTCGTCCAAGGGAGTGTAGGCGTTCTAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.58

Weight (kDa)

9.43

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	25 - 205	7.5e-67	Glycosyl hydrolases family 16
XET_C	PF06955	245 - 289	4.9e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12940 AT3G12940 AT3G12940
fragaria_vesca	FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740 FvH4_3g15740
malus_domestica	MD00G1150800.v1.1 MD00G1150900.v1.1 MD00G1151000.v1.1 MD05G1230900.v1.1 MD05G1231000.v1.1 MD05G1231200.v1.1 MD05G1231300.v1.1 MD05G1232200.v1.1 MD05G1232500.v1.1 MD10G1202600.v1.1
prunus_persica	Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1 Prupe.4G139600_v2.0.a1
pyrus_communis	pycom05g20160 pycom05g20190
rosa_chinensis	RchiOBHm_Chr5g0026471 RchiOBHm_Chr5g0026521
rosa_laevigata	RLG00000032933
rosa_multiflora	Rmu_sc0004371.1_g000016 Rmu_sc0005581.1_g000018
rosa_roxburghii	Rroxscaffold_1G00052960
rosa_rugosa	Rorug05G0093200 Rorug05G0093300 Rorug05G0093400 Rorug05G0093400 Rorug05G0093400 Rorug05G0093500
rosa_samantha	Rh5AG186600 Rh5BG183300 Rh5CG202600 Rh5CG203200 Rh5DG185800
rosa_wichuraiana	Rw5G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	566
AciI	CCGC	4 cut(s)	240, 255, 566, 588
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	42, 255
AfaI	GTAC	2 cut(s)	703, 803
AfiI	CCNNNNNNNGG	3 cut(s)	94, 663, 712
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	7, 493, 646, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	62, 110, 217, 223, 544, 642
AluI	AGCT	6 cut(s)	62, 110, 217, 223, 544, 642
Alw26I	GTCTC	2 cut(s)	560, 672
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	2 cut(s)	550, 669
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	50, 53, 214
Asp700I	GAANNNNTTC	1 cut(s)	839
AspS9I	GGNCC	4 cut(s)	151, 278, 568, 609
AsuC2I	CCSGG	2 cut(s)	77, 771
AsuHPI	GGTGA	2 cut(s)	110, 244
AvaI	CYCGRG	2 cut(s)	550, 669
AvaII	GGWCC	3 cut(s)	151, 568, 609
AxyI	CCTNAGG	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	261, 787
BbvI	GCAGC	3 cut(s)	37, 40, 226
BccI	CCATC	3 cut(s)	111, 710, 783
BcnI	CCSGG	2 cut(s)	77, 771
BcoDI	GTCTC	2 cut(s)	560, 672
BfaI	CTAG	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	51, 54, 215
BlsI	GCNGC	3 cut(s)	52, 55, 216
Bme1390I	CCNGG	2 cut(s)	77, 771
Bme18I	GGWCC	3 cut(s)	151, 568, 609
BmeT110I	CYCGRG	2 cut(s)	550, 669
BmgT120I	GGNCC	4 cut(s)	151, 278, 568, 609
BmiI	GGNNCC	2 cut(s)	247, 618
BmrFI	CCNGG	2 cut(s)	77, 771
BmsI	GCATC	1 cut(s)	735
BpiI	GAAGAC	2 cut(s)	261, 787
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpuEI	CTTGAG	2 cut(s)	340, 738
BpuMI	CCSGG	2 cut(s)	77, 771
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	612, 857
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 663, 712
Bse118I	RCCGGY	2 cut(s)	230, 242
Bse1I	ACTGG	1 cut(s)	611
Bse21I	CCTNAGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	612, 857
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	3 cut(s)	94, 663, 712
BseMII	CTCAG	2 cut(s)	776, 860
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	37, 40, 226
BsgI	GTGCAG	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	566
Bsh1285I	CGRYCG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	775
BsiHKCI	CYCGRG	2 cut(s)	550, 669
BsiSI	CCGG	5 cut(s)	76, 231, 243, 713, 771
BslI	CCNNNNNNNGG	3 cut(s)	94, 663, 712
BsmAI	GTCTC	2 cut(s)	560, 672
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	672
BsoBI	CYCGRG	2 cut(s)	550, 669
Bsp143I	GATC	2 cut(s)	9, 328
BspACI	CCGC	4 cut(s)	240, 255, 566, 588
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	777, 859
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	247, 618
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	672
BsrFI	RCCGGY	2 cut(s)	230, 242
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	2 cut(s)	230, 242
BssECI	CCNNGG	2 cut(s)	612, 857
BssMI	GATC	2 cut(s)	9, 328
BssT1I	CCWWGG	2 cut(s)	612, 857
Bst4CI	ACNGT	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	232, 244, 590
BstDEI	CTNAG	3 cut(s)	111, 785, 846
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	2 cut(s)	12, 331
BstMAI	GTCTC	2 cut(s)	560, 672
BstMBI	GATC	2 cut(s)	9, 328
BstMCI	CGRYCG	1 cut(s)	775
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 220
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	75, 769
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	37, 40, 226
BstV2I	GAAGAC	2 cut(s)	261, 787
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	328
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	3 cut(s)	232, 244, 590
Cfr10I	RCCGGY	2 cut(s)	230, 242
Cfr13I	GGNCC	4 cut(s)	151, 278, 568, 609
Csp6I	GTAC	2 cut(s)	702, 802
CviAII	CATG	4 cut(s)	46, 211, 538, 808
CviQI	GTAC	2 cut(s)	702, 802
DdeI	CTNAG	3 cut(s)	111, 785, 846
DpnI	GATC	2 cut(s)	11, 330
DpnII	GATC	2 cut(s)	9, 328
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	612, 857
Eco31I	GGTCTC	1 cut(s)	672
Eco47I	GGWCC	3 cut(s)	151, 568, 609
Eco57I	CTGAAG	2 cut(s)	42, 255
Eco81I	CCTNAGG	1 cut(s)	846
Eco88I	CYCGRG	2 cut(s)	550, 669
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	612, 857
ErhI	CCWWGG	2 cut(s)	612, 857
FaeI	CATG	4 cut(s)	49, 214, 541, 811
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	4 cut(s)	45, 210, 537, 807
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	3 cut(s)	51, 54, 215
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	3 cut(s)	51, 54, 215
FspBI	CTAG	1 cut(s)	876
GluI	GCNGC	3 cut(s)	51, 54, 215
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	5 cut(s)	76, 231, 243, 713, 771
Hin1II	CATG	4 cut(s)	49, 214, 541, 811
HindIII	AAGCTT	2 cut(s)	221, 640
HinfI	GANTC	7 cut(s)	204, 283, 442, 503, 553, 751, 840
HpaII	CCGG	5 cut(s)	76, 231, 243, 713, 771
HphI	GGTGA	2 cut(s)	110, 244
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	149, 287, 559
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	351, 451
HpyCH4V	TGCA	4 cut(s)	214, 767, 796, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 220
HpyF3I	CTNAG	3 cut(s)	111, 785, 846
HpySE526I	ACGT	2 cut(s)	351, 451
Hsp92II	CATG	4 cut(s)	49, 214, 541, 811
KroI	GCCGGC	2 cut(s)	230, 242
KroNI	GCCGGC	2 cut(s)	232, 244
Kzo9I	GATC	2 cut(s)	9, 328
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	3 cut(s)	37, 40, 226
LweI	GCATC	1 cut(s)	735
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	2 cut(s)	351, 451
MaeIII	GTNAC	2 cut(s)	98, 250
MalI	GATC	2 cut(s)	11, 330
MboI	GATC	2 cut(s)	9, 328
MboII	GAAGA	5 cut(s)	19, 261, 669, 789, 792
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	3 cut(s)	67, 386, 507
MlyI	GAGTC	2 cut(s)	562, 745
MnlI	CCTC	6 cut(s)	119, 143, 146, 493, 792, 855
MroNI	GCCGGC	2 cut(s)	230, 242
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	2 cut(s)	219, 762
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	5 cut(s)	76, 231, 243, 713, 771
MspR9I	CCNGG	2 cut(s)	77, 771
MunI	CAATTG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	59, 220
NaeI	GCCGGC	2 cut(s)	232, 244
NciI	CCSGG	2 cut(s)	77, 771
NdeII	GATC	2 cut(s)	9, 328
NgoMIV	GCCGGC	2 cut(s)	230, 242
NlaIII	CATG	4 cut(s)	49, 214, 541, 811
NlaIV	GGNNCC	2 cut(s)	247, 618
NmuCI	GTSAC	2 cut(s)	98, 250
NspI	RCATGY	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdiI	GCCGGC	2 cut(s)	232, 244
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	5 cut(s)	204, 283, 442, 503, 840
PkrI	GCNGC	3 cut(s)	52, 55, 216
PleI	GAGTC	2 cut(s)	561, 745
PpsI	GAGTC	2 cut(s)	561, 745
PsiI	TTATAA	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	247, 618
PspPI	GGNCC	4 cut(s)	151, 278, 568, 609
PspXI	VCTCGAGB	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	703, 803
RsaNI	GTAC	2 cut(s)	702, 802
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	219, 762
SatI	GCNGC	3 cut(s)	51, 54, 215
Sau3AI	GATC	2 cut(s)	9, 328
Sau96I	GGNCC	4 cut(s)	151, 278, 568, 609
SchI	GAGTC	2 cut(s)	562, 745
ScrFI	CCNGG	2 cut(s)	77, 771
SfaNI	GCATC	1 cut(s)	735
Sfr274I	CTCGAG	1 cut(s)	550
SinI	GGWCC	3 cut(s)	151, 568, 609
SlaI	CTCGAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	4 cut(s)	218, 319, 550, 753
SmoI	CTYRAG	4 cut(s)	218, 319, 550, 753
Sse9I	AATT	3 cut(s)	67, 386, 507
SsiI	CCGC	4 cut(s)	240, 255, 566, 588
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	2 cut(s)	75, 769
StyI	CCWWGG	2 cut(s)	612, 857
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	354, 454
TaqI	TCGA	7 cut(s)	84, 106, 120, 207, 402, 551, 775
TasI	AATT	3 cut(s)	67, 386, 507
TfiI	GAWTC	5 cut(s)	204, 283, 442, 503, 840
Tru1I	TTAA	2 cut(s)	219, 762
Tru9I	TTAA	2 cut(s)	219, 762
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	98, 250
TseI	GCWGC	3 cut(s)	50, 53, 214
Tsp45I	GTSAC	2 cut(s)	98, 250
TspDTI	ATGAA	4 cut(s)	30, 34, 554, 669
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	832
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	151, 568, 609
XceI	RCATGY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.