Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Forward (+)

4242100 .. 4244173

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACGACTGCAGCACGACCAACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCATCTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAGGGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGATGAGCTTGAAGAGCGTGAGAGGAGACATTTCTCATCAAAAGACAAATCATACAATGATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAGACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAGTGATGACGAAAGTGACGATGATGATGAGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGAAAGAAAGAGTGGAAGAGAGGCTCAGGAAGGAAAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGCGTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAAAACCAGGCACGTGGTGAAATGAAAGCTCCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCATAGATACATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

230

Amino Acids

27.03

Weight (kDa)

5.22

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	1 - 230	6.9e-75	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	110, 304
AciI	CCGC	3 cut(s)	108, 304, 419
AclWI	GGATC	3 cut(s)	74, 287, 300
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	2 cut(s)	318, 426
AcvI	CACGTG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	608
AfeI	AGCGCT	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	191, 592
AjnI	CCWGG	2 cut(s)	23, 597
AluBI	AGCT	6 cut(s)	35, 187, 268, 410, 493, 620
AluI	AGCT	6 cut(s)	35, 187, 268, 410, 493, 620
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	74, 287, 300
Aor51HI	AGCGCT	1 cut(s)	629
ApeKI	GCWGC	2 cut(s)	11, 478
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	31
BbrPI	CACGTG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	23, 490
BccI	CCATC	2 cut(s)	85, 478
BciT130I	CCWGG	2 cut(s)	25, 599
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	631
BisI	GCNGC	3 cut(s)	12, 108, 479
BlsI	GCNGC	3 cut(s)	13, 109, 480
Bme1390I	CCNGG	2 cut(s)	25, 599
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	30, 294
BmrFI	CCNGG	2 cut(s)	25, 599
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	15, 146
Bpu10I	CCTNAGC	4 cut(s)	36, 461, 501, 624
BpuEI	CTTGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	605
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	24, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	530
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	25, 599
BseDI	CCNNGG	2 cut(s)	24, 128
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	95, 475
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	23, 490
BsiHKAI	GWGCWC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	31, 64
Bsp143I	GATC	3 cut(s)	66, 247, 292
BspACI	CCGC	3 cut(s)	108, 304, 419
BspCNI	CTCAG	2 cut(s)	94, 474
BspLI	GGNNCC	2 cut(s)	30, 294
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	3 cut(s)	74, 287, 300
BspQI	GCTCTTC	3 cut(s)	186, 294, 483
BsrBI	CCGCTC	2 cut(s)	110, 304
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	24, 128
BssMI	GATC	3 cut(s)	66, 247, 292
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	25, 599
Bst6I	CTCTTC	6 cut(s)	186, 250, 294, 447, 483, 501
BstBAI	YACGTR	1 cut(s)	605
BstDEI	CTNAG	5 cut(s)	36, 81, 461, 501, 624
BstF5I	GGATG	1 cut(s)	580
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	69, 250, 295
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	66, 247, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 416
BstNI	CCWGG	2 cut(s)	25, 599
BstSCI	CCNGG	2 cut(s)	23, 597
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 490
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	66, 292
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	66, 292
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	325, 402
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	547
CviAII	CATG	1 cut(s)	685
CviJI	RGCY	9 cut(s)	29, 35, 127, 187, 268, 410, 460, 493, 620
CviKI_1	RGCY	9 cut(s)	29, 35, 127, 187, 268, 410, 460, 493, 620
DdeI	CTNAG	5 cut(s)	36, 81, 461, 501, 624
DpnI	GATC	3 cut(s)	68, 249, 294
DpnII	GATC	3 cut(s)	66, 247, 292
DraI	TTTAAA	1 cut(s)	123
DraIII	CACNNNGTG	1 cut(s)	608
Eam1104I	CTCTTC	6 cut(s)	186, 250, 294, 447, 483, 501
EarI	CTCTTC	6 cut(s)	186, 250, 294, 447, 483, 501
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	318, 426
Eco72I	CACGTG	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	23, 597
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	688
FaiI	YATR	4 cut(s)	232, 416, 678, 686
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	684
Fnu4HI	GCNGC	3 cut(s)	12, 108, 479
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	12, 108, 479
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	3 cut(s)	12, 108, 479
GsuI	CTGGAG	2 cut(s)	15, 146
HaeII	RGCGCY	1 cut(s)	631
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	281, 335
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	3 cut(s)	66, 84, 340
Hpy188III	TCNNGA	6 cut(s)	152, 163, 179, 296, 463, 649
HpyAV	CCTTC	2 cut(s)	131, 460
HpyCH4IV	ACGT	2 cut(s)	548, 604
HpyCH4V	TGCA	2 cut(s)	11, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 416
HpyF3I	CTNAG	5 cut(s)	36, 81, 461, 501, 624
HpySE526I	ACGT	2 cut(s)	548, 604
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	66, 247, 292
LguI	GCTCTTC	3 cut(s)	186, 294, 483
LmnI	GCTCC	2 cut(s)	34, 625
Lsp1109I	GCAGC	2 cut(s)	23, 490
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	2 cut(s)	548, 604
MaeIII	GTNAC	3 cut(s)	44, 356, 380
MalI	GATC	3 cut(s)	68, 249, 294
MbiI	CCGCTC	2 cut(s)	110, 304
MboI	GATC	3 cut(s)	66, 247, 292
MboII	GAAGA	9 cut(s)	167, 178, 203, 267, 290, 311, 464, 500, 518
MflI	RGATCY	2 cut(s)	66, 292
MhlI	GDGCHC	2 cut(s)	31, 64
MluCI	AATT	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	122, 537
MspR9I	CCNGG	2 cut(s)	25, 599
MvaI	CCWGG	2 cut(s)	25, 599
MwoI	GCNNNNNNNGC	2 cut(s)	193, 416
NdeII	GATC	3 cut(s)	66, 247, 292
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	2 cut(s)	30, 294
NmuCI	GTSAC	2 cut(s)	356, 380
PciSI	GCTCTTC	3 cut(s)	186, 294, 483
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	13, 109, 480
PleI	GAGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	23, 597
PspCI	CACGTG	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	23, 597
PspN4I	GGNNCC	2 cut(s)	30, 294
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	66, 292
SapI	GCTCTTC	3 cut(s)	186, 294, 483
SaqAI	TTAA	2 cut(s)	122, 537
SatI	GCNGC	3 cut(s)	12, 108, 479
Sau3AI	GATC	3 cut(s)	66, 247, 292
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	25, 599
SduI	GDGCHC	2 cut(s)	31, 64
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	668
SsiI	CCGC	3 cut(s)	108, 304, 419
StyD4I	CCNGG	2 cut(s)	23, 597
StyI	CCWWGG	1 cut(s)	128
TaiI	ACGT	2 cut(s)	551, 607
TaqI	TCGA	2 cut(s)	284, 426
TasI	AATT	1 cut(s)	668
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	122, 537
Tru9I	TTAA	2 cut(s)	122, 537
TscAI	CASTG	2 cut(s)	325, 409
TseFI	GTSAC	2 cut(s)	356, 380
TseI	GCWGC	2 cut(s)	11, 478
Tsp45I	GTSAC	2 cut(s)	356, 380
TspDTI	ATGAA	2 cut(s)	622, 629
TspRI	CASTG	2 cut(s)	325, 409
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.