Rroxscaffold_6G00401790

Protein CWC15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006245
Physical Location & Seq
Reverse (-)
24165534 .. 24168288
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401790.1

Sequence Viewer

Length: 702 bp
ATGACGACCGCAGCTCGACCCACATGGGCTCCTGCAAAAGGTGGTAATGAACAAGGTGGTACTCGGATTTTTGGCCCATCCCAAAAGTACTCATCAAGGGATATTGCATCGCATACAACTCTAAAACCCAGAAAGGACGGGCAGGACACCCAGGAAGAACTGCAGAAGAGGAACCTCCAGGAGGAGTTGGAAGACCGTGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGCAGCCAGCTTTTGTTGGAAGGGACAAGAAGGGACACTGAAGACCGCATTGTACCACGTAATGTAGATGCTGATGATTCTGATTTGGAAGTCAAAAGTGATGATGACAGTGATGAAGATGATGATGATGATGAGGATGACACAGAAGCTCTTTTGGCTGAGCTTGAACAAATAAAGAGGGAAAGAGCAGAGGAGAAGCGTCGAAAGGAAGAACAACAGGTGGCGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAGGAAACCCATTACTTAATAATCCAATAACCGCTTCTTCCTTCAGTGTGAAAAGAAGATGGGATGATGATGTGGTGTTCAAAAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAATGACACAGTGAGGAACGACTTTCACCGCAAATTTCTGCATAAATACATGAAGTAA

Protein Analysis

233

Amino Acids

27.21

Weight (kDa)

5.39

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cwf_Cwc_15 PF04889 1 - 233 2.2e-75 Cwf15/Cwc15 cell cycle control protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 9, 304, 482, 552, 673
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 2 cut(s) 318, 547
AfaI GTAC 3 cut(s) 61, 89, 312
AfeI AGCGCT 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 38, 181
AgsI TTSAA 2 cut(s) 425, 601
AjnI CCWGG 2 cut(s) 150, 177
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
AluBI AGCT 6 cut(s) 14, 268, 407, 421, 490, 511
AluI AGCT 6 cut(s) 14, 268, 407, 421, 490, 511
Aor51HI AGCGCT 1 cut(s) 638
AoxI GGCC 2 cut(s) 73, 609
ApeKI GCWGC 3 cut(s) 11, 249, 261
ApoI RAATTY 1 cut(s) 677
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 74, 610
AsuHPI GGTGA 2 cut(s) 629, 662
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 2 cut(s) 198, 306
BbvI GCAGC 3 cut(s) 23, 261, 273
BccI CCATC 2 cut(s) 85, 573
BciT130I CCWGG 2 cut(s) 152, 179
BfmI CTRYAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 3 cut(s) 12, 250, 262
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 3 cut(s) 13, 251, 263
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 152, 179
BmgT120I GGNCC 2 cut(s) 74, 610
BmiI GGNNCC 2 cut(s) 30, 173
BmrFI CCNGG 2 cut(s) 152, 179
BmsI GCATC 2 cut(s) 116, 316
BpiI GAAGAC 2 cut(s) 198, 306
BpmI CTGGAG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 150, 517, 613
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 181
BseBI CCWGG 2 cut(s) 152, 179
BseDI CCNNGG 3 cut(s) 150, 517, 613
BseGI GGATG 3 cut(s) 77, 400, 589
BseLI CCNNNNNNNGG 2 cut(s) 38, 181
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 4 cut(s) 197, 217, 464, 534
BseXI GCAGC 3 cut(s) 23, 261, 273
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 75, 611
BsiEI CGRYCG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 295, 305
BslI CCNNNNNNNGG 2 cut(s) 38, 181
BsmFI GGGAC 2 cut(s) 295, 305
BsnI GGCC 2 cut(s) 75, 611
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 5 cut(s) 9, 304, 482, 552, 673
BspANI GGCC 2 cut(s) 75, 611
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 30, 173
BspMAI CTGCAG 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 150, 517, 613
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 152, 179
Bst4CI ACNGT 3 cut(s) 197, 368, 655
Bst6I CTCTTC 2 cut(s) 161, 480
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 417, 633
BstDSI CCRYGG 1 cut(s) 613
BstENI CCTNNNNNAGG 2 cut(s) 36, 179
BstF5I GGATG 3 cut(s) 77, 400, 589
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 258, 413
BstNI CCWGG 2 cut(s) 152, 179
BstSCI CCNGG 2 cut(s) 150, 177
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 23, 261, 273
BstV2I GAAGAC 2 cut(s) 198, 306
BsuRI GGCC 2 cut(s) 75, 611
BtgI CCRYGG 1 cut(s) 613
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 77, 400, 589
BtsIMutI CAGTG 4 cut(s) 294, 373, 571, 660
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 2 cut(s) 74, 610
CseI GACGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 60, 88, 311
CviAII CATG 2 cut(s) 24, 694
CviQI GTAC 3 cut(s) 60, 88, 311
DdeI CTNAG 2 cut(s) 417, 633
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 161, 480
EarI CTCTTC 2 cut(s) 161, 480
EciI GGCGGA 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 31
Eco47III AGCGCT 1 cut(s) 638
Eco57I CTGAAG 2 cut(s) 318, 547
EcoNI CCTNNNNNAGG 2 cut(s) 36, 179
EcoRII CCWGG 2 cut(s) 150, 177
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 2 cut(s) 27, 697
FaiI YATR 6 cut(s) 25, 114, 231, 237, 687, 695
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 2 cut(s) 295, 305
FatI CATG 2 cut(s) 23, 693
Fnu4HI GCNGC 3 cut(s) 12, 250, 262
FokI GGATG 3 cut(s) 64, 407, 596
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 12, 250, 262
GlaI GCGC 1 cut(s) 638
GluI GCNGC 3 cut(s) 12, 250, 262
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 75, 611
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 639
Hin1II CATG 2 cut(s) 27, 697
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 2 cut(s) 335, 628
HphI GGTGA 2 cut(s) 629, 662
Hpy188I TCNGA 3 cut(s) 66, 340, 518
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 3 cut(s) 272, 282, 571
HpyCH4III ACNGT 3 cut(s) 197, 368, 655
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 35, 107, 163, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 413
HpyF3I CTNAG 2 cut(s) 417, 633
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 2 cut(s) 27, 697
HspAI GCGC 1 cut(s) 637
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 3 cut(s) 23, 261, 273
LweI GCATC 2 cut(s) 116, 316
MaeII ACGT 1 cut(s) 316
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 9 cut(s) 167, 178, 203, 311, 386, 479, 497, 549, 588
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 1 cut(s) 677
MlyI GAGTC 1 cut(s) 622
MmeI TCCRAC 2 cut(s) 168, 255
MseI TTAA 2 cut(s) 492, 537
MspR9I CCNGG 2 cut(s) 152, 179
MvaI CCWGG 2 cut(s) 152, 179
MwoI GCNNNNNNNGC 2 cut(s) 258, 413
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 27, 697
NlaIV GGNNCC 2 cut(s) 30, 173
PciSI GCTCTTC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 3 cut(s) 13, 251, 263
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 150, 177
PspGI CCWGG 2 cut(s) 150, 177
PspN4I GGNNCC 2 cut(s) 30, 173
PspPI GGNCC 2 cut(s) 74, 610
PstI CTGCAG 1 cut(s) 165
RsaI GTAC 3 cut(s) 61, 89, 312
RsaNI GTAC 3 cut(s) 60, 88, 311
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 492, 537
SatI GCNGC 3 cut(s) 12, 250, 262
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 74, 610
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 2 cut(s) 152, 179
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 2 cut(s) 116, 316
SfcI CTRYAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 677
SsiI CCGC 5 cut(s) 9, 304, 482, 552, 673
StyD4I CCNGG 2 cut(s) 150, 177
TaaI ACNGT 3 cut(s) 197, 368, 655
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 16, 460
TasI AATT 1 cut(s) 677
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 492, 537
Tru9I TTAA 2 cut(s) 492, 537
TscAI CASTG 4 cut(s) 301, 373, 571, 660
TseI GCWGC 3 cut(s) 11, 249, 261
TspDTI ATGAA 4 cut(s) 63, 204, 387, 631
TspRI CASTG 4 cut(s) 301, 373, 571, 660
XagI CCTNNNNNAGG 2 cut(s) 36, 179
XapI RAATTY 1 cut(s) 677
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.