Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

26811766 .. 26812958

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACGACTGCAGCTCGACCCACGAGGGCTCCTGCGAAAGCTGGTAATGAACAAGGTGGTACTCAGATTTTTGGCCCATCCCAAAAGTACTCATCAAGGGACATTGCATCCCATACAACTCTAAAACCCAAAAAGGACGGAAAGGACATCCAGGAAGAACTGCATAAAAGGAACCTCCAGGAGGAGTTGGAAGACCATGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAACTTTTGTTGGAAAGGATAAGAAGGGACACTGAAGACTGCGTTATACCACGTAATGTCGATGCTGATGATTCTGATATGGAAGTCAAAAGTGATGATGACAGACACCTTGAAGATAATCTGGATGATTGGCTTGCAAAGGGATTGGAGGATTACCTGGATGATGACTACTTAGTTTTTGACTGCCCAGGTATGCATACGAGCATAAGTGTTCCATTGTCTGTATCTATTATCATGCATCAGTTGTTGAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

173

Amino Acids

19.89

Weight (kDa)

5.25

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	1 - 127	1.9e-19	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	61, 89
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	377, 514
AjnI	CCWGG	4 cut(s)	150, 177, 420, 451
AluBI	AGCT	2 cut(s)	14, 41
AluI	AGCT	2 cut(s)	14, 41
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	11, 249
AspS9I	GGNCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	22
BbsI	GAAGAC	2 cut(s)	198, 306
BbvI	GCAGC	2 cut(s)	23, 261
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	4 cut(s)	152, 179, 422, 453
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	12, 250
BlsI	GCNGC	2 cut(s)	13, 251
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	4 cut(s)	152, 179, 422, 453
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	3 cut(s)	30, 173, 263
BmrFI	CCNGG	4 cut(s)	152, 179, 422, 453
BmsI	GCATC	3 cut(s)	116, 316, 511
BpiI	GAAGAC	2 cut(s)	198, 306
BpmI	CTGGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	4 cut(s)	152, 179, 422, 453
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	5 cut(s)	77, 107, 147, 394, 430
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	197, 217
BseXI	GCAGC	2 cut(s)	23, 261
BshFI	GGCC	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	113, 305
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	113, 305
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	30, 173, 263
BspMAI	CTGCAG	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	4 cut(s)	152, 179, 422, 453
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	63, 436
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	5 cut(s)	77, 107, 147, 394, 430
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	4 cut(s)	152, 179, 422, 453
BstSCI	CCNGG	4 cut(s)	150, 177, 420, 451
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 261
BstV2I	GAAGAC	2 cut(s)	198, 306
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	77, 107, 147, 394, 430
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	60, 88
CviAII	CATG	2 cut(s)	197, 499
CviJI	RGCY	6 cut(s)	14, 29, 41, 75, 264, 397
CviKI_1	RGCY	6 cut(s)	14, 29, 41, 75, 264, 397
CviQI	GTAC	2 cut(s)	60, 88
DdeI	CTNAG	2 cut(s)	63, 436
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	150, 177, 420, 451
EcoT22I	ATGCAT	2 cut(s)	462, 504
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	2 cut(s)	200, 502
FaqI	GGGAC	2 cut(s)	113, 305
FatI	CATG	2 cut(s)	196, 498
Fnu4HI	GCNGC	2 cut(s)	12, 250
FokI	GGATG	5 cut(s)	64, 94, 134, 401, 437
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	12, 250
GluI	GCNGC	2 cut(s)	12, 250
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	200, 502
HinfI	GANTC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	66, 340
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	6 cut(s)	11, 107, 163, 401, 460, 502
HpyF3I	CTNAG	2 cut(s)	63, 436
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	200, 502
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	34, 261
Lsp1109I	GCAGC	2 cut(s)	23, 261
LweI	GCATC	3 cut(s)	116, 316, 511
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	4 cut(s)	167, 203, 311, 389
MhlI	GDGCHC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	168, 255
MnlI	CCTC	7 cut(s)	18, 175, 185, 195, 198, 251, 406
Mph1103I	ATGCAT	2 cut(s)	462, 504
MspR9I	CCNGG	4 cut(s)	152, 179, 422, 453
MvaI	CCWGG	4 cut(s)	152, 179, 422, 453
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	200, 502
NlaIV	GGNNCC	3 cut(s)	30, 173, 263
NsiI	ATGCAT	2 cut(s)	462, 504
PfeI	GAWTC	1 cut(s)	335
PfoI	TCCNGGA	2 cut(s)	150, 177
PkrI	GCNGC	2 cut(s)	13, 251
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	4 cut(s)	150, 177, 420, 451
PspGI	CCWGG	4 cut(s)	150, 177, 420, 451
PspN4I	GGNNCC	3 cut(s)	30, 173, 263
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	2 cut(s)	61, 89
RsaNI	GTAC	2 cut(s)	60, 88
SatI	GCNGC	2 cut(s)	12, 250
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	4 cut(s)	152, 179, 422, 453
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	9 cut(s)	16, 43, 58, 177, 319, 375, 423, 457, 520
SfaNI	GCATC	3 cut(s)	116, 316, 511
SfcI	CTRYAG	1 cut(s)	9
StyD4I	CCNGG	4 cut(s)	150, 177, 420, 451
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	16, 324
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	11, 249
TspDTI	ATGAA	2 cut(s)	63, 204
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	462, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.