Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

1982693 .. 1984503

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACGACAGCAGCTAGACCCACGTGGGCACCTGCTAAAGGTGGTAATGAACAAGGTGGTACTCGGATTTTTGGCCCGTCACAGAAATACTCATCAAGGGACATGGCTGCCCATACATCTTTAAAACCCAGAAAGCCGGGGCAGGACACCCAGGATGAGTTGCAGAAGAAGAACCTCCGGGAGGAACTGGAAGAGAGTGAAAGGAAGCATTATTCATCAAAGGATAAATCTTATAGTTATGACAGAGATCGCAGGAGGGGTAACCAGCTGTTATTGGAAGGGGGCAGAAGGGACACTGAAATTGTGCCACGTAATATAGATGCTGATGATTCTGACGTGGAAGCCCAAAGTGATGATGAAAGTGGTGAAGATGACGATGACGAGGAGGATGACATGGAAGCTCTATTGGCCGAGCTTGAACAAATAAAGAAGGAAAAAGCAGAGGAAAAGTTACGGAAGGAAAGACTAGAGAGGGAGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAAACCCATTGCTTAATGGTGCAGCACCCGCATCGTTTAGTGTGAAAAGAAGGTTAGTCGCGATTTTACTCCTAGCTTGTTCTGTGATCAAATGGGATGACGATGTGGTGTTCAAGAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAATGACACAGTCAGGAGCGACTTTCACCGCAAATTCCTGCAGAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

243

Amino Acids

27.84

Weight (kDa)

5.54

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	575
AciI	CCGC	2 cut(s)	543, 700
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	704
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	61
AfeI	AGCGCT	1 cut(s)	665
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	2 cut(s)	419, 628
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	7 cut(s)	14, 268, 401, 415, 484, 505, 590
AluI	AGCT	7 cut(s)	14, 268, 401, 415, 484, 505, 590
Aor51HI	AGCGCT	1 cut(s)	665
AoxI	GGCC	3 cut(s)	73, 408, 636
ApeKI	GCWGC	3 cut(s)	11, 107, 536
ApoI	RAATTY	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	74, 637
AsuC2I	CCSGG	2 cut(s)	138, 179
AsuHPI	GGTGA	3 cut(s)	377, 656, 689
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	28
BbrPI	CACGTG	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	23, 94, 548
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	2 cut(s)	138, 179
BfaI	CTAG	3 cut(s)	15, 467, 587
BfmI	CTRYAG	1 cut(s)	710
BfoI	RGCGCY	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	12, 108, 537
BlsI	GCNGC	3 cut(s)	13, 109, 538
Bme1390I	CCNGG	3 cut(s)	138, 152, 179
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	74, 637
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	138, 152, 179
BmsI	GCATC	2 cut(s)	310, 554
Bpu10I	CCTNAGC	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	138, 179
BsaAI	YACGTR	2 cut(s)	24, 311
BsaJI	CCNNGG	4 cut(s)	137, 150, 511, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	4 cut(s)	137, 150, 511, 640
BseGI	GGATG	3 cut(s)	160, 394, 616
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMI	GCAATG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	23, 94, 548
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	75, 410, 638
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	137, 178
BslFI	GGGAC	2 cut(s)	113, 305
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
BsmFI	GGGAC	2 cut(s)	113, 305
BsnI	GGCC	3 cut(s)	75, 410, 638
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	247, 600
Bsp68I	TCGCGA	1 cut(s)	575
BspACI	CCGC	2 cut(s)	543, 700
BspANI	GGCC	3 cut(s)	75, 410, 638
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	714
BspMI	ACCTGC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	4 cut(s)	137, 150, 511, 640
BssMI	GATC	2 cut(s)	247, 600
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	2 cut(s)	186, 474
BstBAI	YACGTR	2 cut(s)	24, 311
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	1 cut(s)	640
BstEII	GGTNACC	1 cut(s)	260
BstENI	CCTNNNNNAGG	2 cut(s)	36, 179
BstF5I	GGATG	3 cut(s)	160, 394, 616
BstFNI	CGCG	1 cut(s)	575
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	2 cut(s)	250, 603
BstMBI	GATC	2 cut(s)	247, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 542
BstNI	CCWGG	1 cut(s)	152
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	136, 150, 177
BstSFI	CTRYAG	1 cut(s)	710
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	23, 94, 548
BsuRI	GGCC	3 cut(s)	75, 410, 638
BtgI	CCRYGG	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	160, 394, 616
BtsIMutI	CAGTG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	575
BveI	ACCTGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	74, 637
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	3 cut(s)	103, 394, 721
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	2 cut(s)	249, 602
DpnII	GATC	2 cut(s)	247, 600
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	186, 474
EarI	CTCTTC	2 cut(s)	186, 474
Eco47III	AGCGCT	1 cut(s)	665
Eco72I	CACGTG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 179
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	106, 397, 724
FaiI	YATR	7 cut(s)	104, 114, 234, 240, 317, 395, 722
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	113, 305
FatI	CATG	3 cut(s)	102, 393, 720
FauI	CCCGC	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	12, 108, 537
FokI	GGATG	3 cut(s)	167, 401, 623
Fsp4HI	GCNGC	3 cut(s)	12, 108, 537
FspBI	CTAG	3 cut(s)	15, 467, 587
GlaI	GCGC	1 cut(s)	665
GluI	GCNGC	3 cut(s)	12, 108, 537
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	3 cut(s)	75, 410, 638
HapII	CCGG	2 cut(s)	137, 178
HhaI	GCGC	1 cut(s)	666
Hin1II	CATG	3 cut(s)	106, 397, 724
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HinfI	GANTC	3 cut(s)	329, 631, 655
HpaII	CCGG	2 cut(s)	137, 178
HphI	GGTGA	3 cut(s)	377, 656, 689
Hpy188I	TCNGA	3 cut(s)	66, 334, 512
Hpy188III	TCNNGA	3 cut(s)	574, 628, 685
HpyAV	CCTTC	5 cut(s)	272, 282, 424, 451, 558
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	3 cut(s)	23, 310, 336
HpyCH4V	TGCA	3 cut(s)	163, 536, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 542
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	3 cut(s)	23, 310, 336
Hsp92II	CATG	3 cut(s)	106, 397, 724
HspAI	GCGC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	247, 600
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	687
Lsp1109I	GCAGC	3 cut(s)	23, 94, 548
LweI	GCATC	2 cut(s)	310, 554
MaeI	CTAG	3 cut(s)	15, 467, 587
MaeII	ACGT	3 cut(s)	23, 310, 336
MaeIII	GTNAC	3 cut(s)	78, 260, 450
MalI	GATC	2 cut(s)	249, 602
MboI	GATC	2 cut(s)	247, 600
MboII	GAAGA	5 cut(s)	178, 181, 203, 380, 491
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	300, 704
MlyI	GAGTC	1 cut(s)	649
MnlI	CCTC	9 cut(s)	175, 185, 249, 376, 379, 436, 465, 469, 506
MseI	TTAA	3 cut(s)	122, 486, 528
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	137, 178
MspR9I	CCNGG	3 cut(s)	138, 152, 179
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	407, 542
NciI	CCSGG	2 cut(s)	138, 179
NdeII	GATC	2 cut(s)	247, 600
NlaIII	CATG	3 cut(s)	106, 397, 724
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	78
NruI	TCGCGA	1 cut(s)	575
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	329, 631
PflFI	GACNNNGTC	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	13, 109, 538
PleI	GAGTC	1 cut(s)	649
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	649
Ppu21I	YACGTR	2 cut(s)	24, 311
Psp6I	CCWGG	1 cut(s)	150
PspCI	CACGTG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	74, 637
PstI	CTGCAG	1 cut(s)	714
PsyI	GACNNNGTC	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	268
RruI	TCGCGA	1 cut(s)	575
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	122, 486, 528
SatI	GCNGC	3 cut(s)	12, 108, 537
Sau3AI	GATC	2 cut(s)	247, 600
Sau96I	GGNCC	2 cut(s)	74, 637
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	3 cut(s)	138, 152, 179
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	310, 554
SfcI	CTRYAG	1 cut(s)	710
Sse9I	AATT	2 cut(s)	300, 704
SsiI	CCGC	2 cut(s)	543, 700
SspMI	CTAG	3 cut(s)	15, 467, 587
StyD4I	CCNGG	3 cut(s)	136, 150, 177
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	3 cut(s)	26, 313, 339
TasI	AATT	2 cut(s)	300, 704
TfiI	GAWTC	2 cut(s)	329, 631
Tru1I	TTAA	3 cut(s)	122, 486, 528
Tru9I	TTAA	3 cut(s)	122, 486, 528
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	3 cut(s)	11, 107, 536
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	63, 204, 372, 658
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	680
XagI	CCTNNNNNAGG	2 cut(s)	36, 179
XapI	RAATTY	1 cut(s)	704
XspI	CTAG	3 cut(s)	15, 467, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.