Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

3152179 .. 3155041

Gene Structure 2863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACGACGGCTGCTCGACCCACGTGGGCACCTGCGAAAGGTGGTGATGAACAAGGTGGTACTCGGATTTTTGGACCATCACAGAAATACTCGTCCAGGGACATGGCTGCCCATACATCACTAAAGCCCAGAAAGCCGGGGCAAGACACCCAGGATGAATTGCAGAAGAAGAACCTCCGGGAGGAACTGGAAGAGAGCGAAAGAAAGCATTATTCATCAAAGGATAAATCTTATAGTTATGACAGAGATCGCAGGAGGGGAAACCAGCTGTTGTTGGAAGGGGGCAGAAGGGACACTGAAATTGTGCCACGTAATATAGATGCTGATGATTCTGACGTGGAAGCTCAAAGTGATGATGAAAGTGGTGAAGATGACGATGATGAGGAGGATGACATGGAAGCTCTACTGGCTGAGCTTGAACAAATAAAGAAGGAAAAAGCAGAGGAGAAGTTACGGAAGGAACGACTAGAGAGGGAGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAAACCCATTGCTTAATGGTGCAGCGCCCGCATCATTTAGTGTGAAAAGAAGATGGGATGACGATGTGGTGTTCAAGAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAATGATACCGTCAGGAGTGACTTTCACCGCAAATTCCTGCAGAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

230

Amino Acids

26.5

Weight (kDa)

5.33

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	1 - 229	6.8e-76	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	2 cut(s)	543, 661
AcsI	RAATTY	1 cut(s)	665
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	61
AfeI	AGCGCT	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	2 cut(s)	419, 589
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	95, 150
AluBI	AGCT	6 cut(s)	268, 344, 401, 415, 484, 505
AluI	AGCT	6 cut(s)	268, 344, 401, 415, 484, 505
Aor51HI	AGCGCT	1 cut(s)	626
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	3 cut(s)	11, 107, 536
ApoI	RAATTY	1 cut(s)	665
AspLEI	GCGC	2 cut(s)	541, 627
AspS9I	GGNCC	2 cut(s)	74, 598
AsuC2I	CCSGG	2 cut(s)	138, 179
AsuHPI	GGTGA	4 cut(s)	56, 377, 617, 650
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	28
BbrPI	CACGTG	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	94, 548
BccI	CCATC	2 cut(s)	85, 561
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	97, 152
BcnI	CCSGG	2 cut(s)	138, 179
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	671
BfoI	RGCGCY	2 cut(s)	542, 628
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	12, 108, 537
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	13, 109, 538
Bme1390I	CCNGG	4 cut(s)	97, 138, 152, 179
Bme18I	GGWCC	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	74, 598
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	4 cut(s)	97, 138, 152, 179
BmsI	GCATC	2 cut(s)	310, 554
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuMI	CCSGG	2 cut(s)	138, 179
BsaAI	YACGTR	2 cut(s)	24, 311
BsaJI	CCNNGG	5 cut(s)	96, 137, 150, 511, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse1I	ACTGG	2 cut(s)	192, 411
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	2 cut(s)	97, 152
BseDI	CCNNGG	5 cut(s)	96, 137, 150, 511, 601
BseGI	GGATG	3 cut(s)	160, 394, 577
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	192, 411
BseRI	GAGGAG	2 cut(s)	398, 458
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	94, 548
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	599
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	137, 178
BslFI	GGGAC	2 cut(s)	113, 305
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
BsmFI	GGGAC	2 cut(s)	113, 305
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	247
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	543, 661
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	192, 411
BssECI	CCNNGG	5 cut(s)	96, 137, 150, 511, 601
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	97, 152
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	2 cut(s)	186, 474
BstBAI	YACGTR	2 cut(s)	24, 311
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	411, 621
BstDSI	CCRYGG	1 cut(s)	601
BstENI	CCTNNNNNAGG	2 cut(s)	36, 179
BstF5I	GGATG	3 cut(s)	160, 394, 577
BstH2I	RGCGCY	2 cut(s)	542, 628
BstHHI	GCGC	2 cut(s)	541, 627
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 407, 542
BstNI	CCWGG	2 cut(s)	97, 152
BstSCI	CCNGG	4 cut(s)	95, 136, 150, 177
BstSFI	CTRYAG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	94, 548
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	601
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	160, 394, 577
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	2 cut(s)	541, 627
Cfr13I	GGNCC	2 cut(s)	74, 598
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	3 cut(s)	103, 394, 682
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	411, 621
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	186, 474
EarI	CTCTTC	2 cut(s)	186, 474
Eco47I	GGWCC	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	626
Eco72I	CACGTG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 179
EcoRII	CCWGG	2 cut(s)	95, 150
FaeI	CATG	3 cut(s)	106, 397, 685
FaiI	YATR	7 cut(s)	104, 114, 234, 240, 317, 395, 683
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	113, 305
FatI	CATG	3 cut(s)	102, 393, 681
FauI	CCCGC	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	12, 108, 537
FokI	GGATG	3 cut(s)	167, 401, 584
Fsp4HI	GCNGC	3 cut(s)	12, 108, 537
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	2 cut(s)	540, 626
GluI	GCNGC	3 cut(s)	12, 108, 537
HaeII	RGCGCY	2 cut(s)	542, 628
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	2 cut(s)	137, 178
HhaI	GCGC	2 cut(s)	541, 627
Hin1II	CATG	3 cut(s)	106, 397, 685
Hin6I	GCGC	2 cut(s)	539, 625
HinP1I	GCGC	2 cut(s)	539, 625
HinfI	GANTC	3 cut(s)	329, 592, 616
HpaII	CCGG	2 cut(s)	137, 178
HphI	GGTGA	4 cut(s)	56, 377, 617, 650
Hpy188I	TCNGA	3 cut(s)	66, 334, 512
Hpy188III	TCNNGA	2 cut(s)	589, 646
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	272, 282, 424, 451
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	3 cut(s)	23, 310, 336
HpyCH4V	TGCA	3 cut(s)	163, 536, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 407, 542
HpyF3I	CTNAG	2 cut(s)	411, 621
HpySE526I	ACGT	3 cut(s)	23, 310, 336
Hsp92II	CATG	3 cut(s)	106, 397, 685
HspAI	GCGC	2 cut(s)	539, 625
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	474
Lsp1109I	GCAGC	2 cut(s)	94, 548
LweI	GCATC	2 cut(s)	310, 554
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	3 cut(s)	23, 310, 336
MaeIII	GTNAC	2 cut(s)	450, 650
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	6 cut(s)	178, 181, 203, 380, 491, 576
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	158, 300, 665
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	175, 185, 249, 376, 379, 436, 465, 469, 506
MseI	TTAA	2 cut(s)	486, 528
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	137, 178
MspR9I	CCNGG	4 cut(s)	97, 138, 152, 179
MvaI	CCWGG	2 cut(s)	97, 152
MwoI	GCNNNNNNNGC	3 cut(s)	133, 407, 542
NciI	CCSGG	2 cut(s)	138, 179
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	106, 397, 685
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	329, 592
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	13, 109, 538
PleI	GAGTC	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	2 cut(s)	24, 311
Psp6I	CCWGG	2 cut(s)	95, 150
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	95, 150
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	74, 598
PstI	CTGCAG	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	486, 528
SatI	GCNGC	3 cut(s)	12, 108, 537
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	74, 598
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	4 cut(s)	97, 138, 152, 179
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	310, 554
SfcI	CTRYAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	3 cut(s)	158, 300, 665
SsiI	CCGC	2 cut(s)	543, 661
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	4 cut(s)	95, 136, 150, 177
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	3 cut(s)	26, 313, 339
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	158, 300, 665
TfiI	GAWTC	2 cut(s)	329, 592
Tru1I	TTAA	2 cut(s)	486, 528
Tru9I	TTAA	2 cut(s)	486, 528
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	3 cut(s)	11, 107, 536
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	5 cut(s)	63, 171, 204, 372, 619
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	2 cut(s)	36, 179
XapI	RAATTY	1 cut(s)	665
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.