Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006604.1

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

84712 .. 86832

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006604.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgacgaccgcagctcgacccacgtgggctcctgcaaaaggtggtaatgaacaaggtggtactcggatttttggcccatcccaaaagtactcatcaagggacattgcatcccacacaactctaaaacccagaaaggacgggcaggacacccaggatgaactgcagaagaggaacctccaggaggagttggaagaccgtgagaggaggcatttttcatcaaaggataaatatagttatgacagagatcgcagcaggagagggagccagcttttgttggaagggacaagaagggacactgaagaccgcattgtaccacgtaatgtagatgctgatgattccgatttggaagtcaaaagtgatgatgacagtgatgaagatgacgatgatgatgaggatgacacagaagctcttttggctgagctagaacaaataaagagggaaagagcagaggagaagcgtcggaaggaagaacaagaggttgcggaagagcttaaagtcaaggaagcagagcttctccgaggaaacccattacttaataatccaataaccgcttcttccttcagtgaagaacaagaggtggcggaagagcttaaagtcaaggaagcagagcttctccgaggaaacccattacttaataatccaataaccgcttcttccttcagtgtcaaaagaagatgggatgatgatgtggtgttcaaaaatcaggcccgtggtgaaaccaagactcctaagcgcttcatcaatgacacagtgaggaacgactttcaccgcaaatttctgcataaatacatgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

265

Amino Acids

30.78

Weight (kDa)

5.09

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	9, 304, 482, 549, 581, 648, 769
AcsI	RAATTY	1 cut(s)	773
AcuI	CTGAAG	3 cut(s)	318, 544, 643
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	3 cut(s)	61, 89, 312
AfeI	AGCGCT	1 cut(s)	734
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	150, 177
AjuI	GAANNNNNNNTTGG	4 cut(s)	535, 567, 634, 666
AluBI	AGCT	8 cut(s)	14, 268, 407, 421, 490, 511, 589, 610
AluI	AGCT	8 cut(s)	14, 268, 407, 421, 490, 511, 589, 610
Aor51HI	AGCGCT	1 cut(s)	734
AoxI	GGCC	2 cut(s)	73, 705
ApeKI	GCWGC	2 cut(s)	11, 249
ApoI	RAATTY	1 cut(s)	773
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	74, 706
AsuHPI	GGTGA	2 cut(s)	725, 758
BanII	GRGCYC	1 cut(s)	31
BbrPI	CACGTG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	198, 306
BbvI	GCAGC	2 cut(s)	23, 261
BccI	CCATC	2 cut(s)	85, 669
BciT130I	CCWGG	2 cut(s)	152, 179
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	736
BisI	GCNGC	2 cut(s)	12, 250
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	13, 251
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	152, 179
BmgT120I	GGNCC	2 cut(s)	74, 706
BmiI	GGNNCC	3 cut(s)	30, 173, 263
BmrFI	CCNGG	2 cut(s)	152, 179
BmsI	GCATC	2 cut(s)	116, 316
BpiI	GAAGAC	2 cut(s)	198, 306
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaAI	YACGTR	2 cut(s)	24, 317
BsaJI	CCNNGG	4 cut(s)	150, 517, 616, 709
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	152, 179
BseDI	CCNNGG	4 cut(s)	150, 517, 616, 709
BseGI	GGATG	5 cut(s)	77, 107, 160, 400, 685
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	3 cut(s)	197, 217, 464
BseXI	GCAGC	2 cut(s)	23, 261
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	75, 707
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	113, 295, 305
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
BsmFI	GGGAC	3 cut(s)	113, 295, 305
BsnI	GGCC	2 cut(s)	75, 707
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	7 cut(s)	9, 304, 482, 549, 581, 648, 769
BspANI	GGCC	2 cut(s)	75, 707
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	30, 173, 263
BspMAI	CTGCAG	1 cut(s)	165
BspQI	GCTCTTC	2 cut(s)	480, 579
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	150, 517, 616, 709
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	152, 179
Bst4CI	ACNGT	3 cut(s)	197, 368, 751
Bst6I	CTCTTC	3 cut(s)	161, 480, 579
BstBAI	YACGTR	2 cut(s)	24, 317
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	417, 729
BstDSI	CCRYGG	1 cut(s)	709
BstENI	CCTNNNNNAGG	2 cut(s)	36, 179
BstF5I	GGATG	5 cut(s)	77, 107, 160, 400, 685
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	152, 179
BstSCI	CCNGG	2 cut(s)	150, 177
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	23, 261
BstV2I	GAAGAC	2 cut(s)	198, 306
BsuRI	GGCC	2 cut(s)	75, 707
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	5 cut(s)	77, 107, 160, 400, 685
BtsIMutI	CAGTG	5 cut(s)	294, 373, 568, 667, 756
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	74, 706
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	60, 88, 311
CviAII	CATG	1 cut(s)	790
CviQI	GTAC	3 cut(s)	60, 88, 311
DdeI	CTNAG	2 cut(s)	417, 729
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	3 cut(s)	161, 480, 579
EarI	CTCTTC	3 cut(s)	161, 480, 579
EciI	GGCGGA	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	31
Eco47III	AGCGCT	1 cut(s)	734
Eco57I	CTGAAG	3 cut(s)	318, 544, 643
Eco72I	CACGTG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 179
EcoRII	CCWGG	2 cut(s)	150, 177
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	1 cut(s)	793
FaiI	YATR	4 cut(s)	231, 237, 783, 791
FalI	AAGNNNNNCTT	4 cut(s)	495, 527, 594, 626
FaqI	GGGAC	3 cut(s)	113, 295, 305
FatI	CATG	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	12, 250
FokI	GGATG	5 cut(s)	64, 94, 167, 407, 692
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	12, 250
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	2 cut(s)	12, 250
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	2 cut(s)	75, 707
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	1 cut(s)	793
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HinfI	GANTC	2 cut(s)	335, 724
HphI	GGTGA	2 cut(s)	725, 758
Hpy188I	TCNGA	5 cut(s)	66, 340, 462, 518, 617
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	5 cut(s)	272, 282, 457, 568, 667
HpyCH4III	ACNGT	3 cut(s)	197, 368, 751
HpyCH4IV	ACGT	2 cut(s)	23, 316
HpyCH4V	TGCA	4 cut(s)	35, 107, 163, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	417, 729
HpySE526I	ACGT	2 cut(s)	23, 316
Hsp92II	CATG	1 cut(s)	793
HspAI	GCGC	1 cut(s)	733
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	2 cut(s)	480, 579
LmnI	GCTCC	2 cut(s)	34, 261
Lsp1109I	GCAGC	2 cut(s)	23, 261
LweI	GCATC	2 cut(s)	116, 316
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	23, 316
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	773
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	3 cut(s)	168, 255, 440
MseI	TTAA	4 cut(s)	492, 534, 591, 633
MspR9I	CCNGG	2 cut(s)	152, 179
MvaI	CCWGG	2 cut(s)	152, 179
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	3 cut(s)	30, 173, 263
PciSI	GCTCTTC	2 cut(s)	480, 579
PfeI	GAWTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	13, 251
PleI	GAGTC	1 cut(s)	718
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	718
Ppu21I	YACGTR	2 cut(s)	24, 317
Psp6I	CCWGG	2 cut(s)	150, 177
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	150, 177
PspN4I	GGNNCC	3 cut(s)	30, 173, 263
PspPI	GGNCC	2 cut(s)	74, 706
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	3 cut(s)	61, 89, 312
RsaNI	GTAC	3 cut(s)	60, 88, 311
SapI	GCTCTTC	2 cut(s)	480, 579
SaqAI	TTAA	4 cut(s)	492, 534, 591, 633
SatI	GCNGC	2 cut(s)	12, 250
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	74, 706
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	2 cut(s)	152, 179
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	116, 316
SfcI	CTRYAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	773
SsiI	CCGC	7 cut(s)	9, 304, 482, 549, 581, 648, 769
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	150, 177
TaaI	ACNGT	3 cut(s)	197, 368, 751
TaiI	ACGT	2 cut(s)	26, 319
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	773
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	4 cut(s)	492, 534, 591, 633
Tru9I	TTAA	4 cut(s)	492, 534, 591, 633
TscAI	CASTG	5 cut(s)	301, 373, 568, 667, 756
TseI	GCWGC	2 cut(s)	11, 249
TspDTI	ATGAA	5 cut(s)	63, 171, 204, 387, 727
TspRI	CASTG	5 cut(s)	301, 373, 568, 667, 756
XagI	CCTNNNNNAGG	2 cut(s)	36, 179
XapI	RAATTY	1 cut(s)	773
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.