Rorug03G0180600

Protein CWC15 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
15474456 .. 15476581
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0180600.1

Sequence Viewer

Length: 1485 bp
ATGGAACCCAATGGTATAGGGGGAGGTTTGTTTCCAGAGATGAGGTCTGGAATGTTAGGCCTAGAAATGCCTCTGCACCAAACACAAAACCCCCCAAATCCTCAGAACCCACACCACCATATGCACCAACCCCAAATGGTCAGCTATGCCCACCAAGAAGCTGATCACAACCATCACCCACAAGCTCACCAATCTGCAAAACATGGGTACCCATATGCCACAAAGCCCAAACAGATCACCCTCAGTGATGAAGATGAACCTGGGTTTGGTGCTGATGACAGCGCTGGTGAAAACAAGAGGAAAATCTCACCATGGCAGAGAATGAAGTGGACTGACACCATGGTCAGGCTTCTAATCATGGCTGTGTTTTACATTGGGGATGAGGGTGGCTCTGAAGGCCCTGATCCCACAGGGAAGAAGAAGAGTGGTGGAGGATTGCTGCAGAAGAAAGGGAAGTGGAAATCGGTGTCGCGGGCTATGATGGAGAAGGGTTTCTATGTCTCTCCTCAGCAATGTGAGGACAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTGAATGACATACTTGGCAAGGGAACTGCTTGCAAGGTTGTGGAGAATCAAGGGTTATTGGAGAAAATGGAATTGTCGTCCAAGATGAAGGACGAAGTTAAAAAACTGCTGAATTCCAAGCACTTGTTCTTTAGGGAAATGTGTGCTTATCACAACAGTTGCGGCCATGGCACTGTTGGTGCTGCTGGAGCTAGCGGTGCGCATAACTCATCCCCGGAAGACCCTTCGGAGGTTCAATTGCAGCAGCAGCAGCAGCAGCAGCAGCCCCAGCAGGAAAGGTGCTTTCATGTATCGGAAAATGCTCATGTCGTTGCCAATTCGGGCAGAACAGAGACGGAGGGATCCAAAATGTTCAAAGCAGAGAGTGGTGGCGAGGATGAAGATGAAGACTATGAGGATGATGGCTCCGAGGATGACGATGATGAGGAGGAAGAAGGGGTTGTTGAAGGCGGTTCGAGGGGTCAAATTGGGCATGGACATGAGGATGAGGATGAGAATGAGCATGAAAGAGCTAAGAGGCCAAGAAAGGGAAGCTGTTTTTCTGGGTCCTCACATAAAATGTTGATGCAGCAATTGAGCAGTGAAGTAAGTGGTGTGATCCAAGATGTGTCCAAGAGTCCATGGGAGAAGAAGCAGTGGATGAAAGCAAGGCTGATACAATTGGAGGAGCAACAAGTGAACTACCAATACCAATCTTTCGAGCTCGAAAAGCAGAGGCTCAAGTGGGTTAAGTATAGTAGCAAAAAGGAAAGGGATATGGAAACAGCTAAGCTTGAGAATGAGAGAAGAAGGCTTGAGAACGAGAGAATGCTATTGCTTGTTAGGCAGAAGGAGCTCGAATTGCTTGATCTGCATCACCACCAGCAGCAACAACATCAGCAACAAAATTCTTCAAACAAGAGAAGCGACCCTTCGTCCCTCACCGGATAA

Protein Analysis

494

Amino Acids

56.17

Weight (kDa)

5.94

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 107 - 200 1.3e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
Acc16I TGCGCA 1 cut(s) 756
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 1 cut(s) 472
AciI CCGC 4 cut(s) 472, 717, 750, 1005
AclWI GGATC 4 cut(s) 398, 891, 904, 1147
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 2 cut(s) 667, 1441
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 209, 548
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1082
AgsI TTSAA 6 cut(s) 529, 538, 791, 910, 1001, 1449
AhdI GACNNNNNGTC 1 cut(s) 1468
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 4 cut(s) 249, 281, 665, 697
Alw21I GWGCWC 2 cut(s) 1260, 1392
Alw26I GTCTC 2 cut(s) 505, 881
AlwI GGATC 4 cut(s) 398, 891, 904, 1147
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 4 cut(s) 58, 397, 718, 1073
ApoI RAATTY 2 cut(s) 667, 1441
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 284, 757
AspS9I GGNCC 2 cut(s) 398, 1101
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1403, 1468
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 1101
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BamHI GGATCC 1 cut(s) 896
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 1260, 1392
BbsI GAAGAC 2 cut(s) 780, 948
Bbv12I GWGCWC 2 cut(s) 1260, 1392
BbvCI CCTCAGC 1 cut(s) 507
BccI CCATC 3 cut(s) 180, 475, 950
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 2 cut(s) 505, 881
BfaI CTAG 2 cut(s) 62, 747
BfmI CTRYAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 1323
Bme1390I CCNGG 2 cut(s) 261, 770
Bme18I GGWCC 1 cut(s) 1101
BmeRI GACNNNNNGTC 1 cut(s) 1468
BmgT120I GGNCC 2 cut(s) 398, 1101
BmiI GGNNCC 5 cut(s) 6, 209, 898, 961, 1102
BmrFI CCNGG 2 cut(s) 261, 770
BmsI GCATC 2 cut(s) 1110, 1417
BmtI GCTAGC 1 cut(s) 750
BpiI GAAGAC 2 cut(s) 780, 948
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1323
BpuEI CTTGAG 3 cut(s) 1259, 1349, 1370
BpuMI CCSGG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 1407
BsaJI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 963, 1175
BsaWI WCCGGW 1 cut(s) 1478
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1082
Bse3DI GCAATG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 1407
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 963, 1175
BseGI GGATG 8 cut(s) 385, 764, 937, 958, 973, 1045, 1051, 1200
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1082
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 3 cut(s) 116, 256, 521
BseRI GAGGAG 3 cut(s) 495, 995, 1235
BseYI CCCAGC 1 cut(s) 822
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 4 cut(s) 60, 399, 720, 1075
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 1260, 1392
BsiSI CCGG 2 cut(s) 770, 1479
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1082
BsmAI GTCTC 2 cut(s) 505, 881
BsmBI CGTCTC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 1456
BsmI GAATGC 1 cut(s) 1368
BsnI GGCC 4 cut(s) 60, 399, 720, 1075
Bsp1286I GDGCHC 2 cut(s) 1260, 1392
Bsp143I GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
Bsp1720I GCTNAGC 1 cut(s) 1323
Bsp19I CCATGG 4 cut(s) 311, 339, 721, 1175
BspACI CCGC 4 cut(s) 472, 717, 750, 1005
BspANI GGCC 4 cut(s) 60, 399, 720, 1075
BspCNI CTCAG 3 cut(s) 115, 255, 520
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 5 cut(s) 6, 209, 898, 961, 1102
BspMAI CTGCAG 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 4 cut(s) 398, 891, 904, 1147
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 518
BssECI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 963, 1175
BssMI GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
BssT1I CCWWGG 4 cut(s) 311, 339, 721, 1175
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 713, 730
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 474, 586, 748
BstDEI CTNAG 5 cut(s) 102, 242, 507, 1068, 1323
BstDSI CCRYGG 4 cut(s) 311, 339, 721, 1175
BstF5I GGATG 8 cut(s) 385, 764, 937, 958, 973, 1045, 1051, 1200
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 2 cut(s) 284, 757
BstKTI GATC 6 cut(s) 166, 237, 406, 899, 1155, 1405
BstMAI GTCTC 2 cut(s) 505, 881
BstMBI GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 259, 768
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 1 cut(s) 472
BstV2I GAAGAC 2 cut(s) 780, 948
BstX2I RGATCY 1 cut(s) 896
BstYI RGATCY 1 cut(s) 896
BsuRI GGCC 4 cut(s) 60, 399, 720, 1075
BtgI CCRYGG 4 cut(s) 311, 339, 721, 1175
BtsCI GGATG 8 cut(s) 385, 764, 937, 958, 973, 1045, 1051, 1200
BtsI GCAGTG 2 cut(s) 1141, 1196
BtsIMutI CAGTG 4 cut(s) 250, 726, 1141, 1196
Cac8I GCNNGC 3 cut(s) 474, 586, 748
CfoI GCGC 2 cut(s) 284, 757
Cfr13I GGNCC 2 cut(s) 398, 1101
Csp6I GTAC 2 cut(s) 208, 547
CviQI GTAC 2 cut(s) 208, 547
DdeI CTNAG 5 cut(s) 102, 242, 507, 1068, 1323
DpnI GATC 6 cut(s) 165, 236, 405, 898, 1154, 1404
DpnII GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
DrdI GACNNNNNNGTC 1 cut(s) 341
DriI GACNNNNNGTC 1 cut(s) 1468
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 416
Eam1105I GACNNNNNGTC 1 cut(s) 1468
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 2 cut(s) 1258, 1390
Eco130I CCWWGG 4 cut(s) 311, 339, 721, 1175
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 1260, 1392
Eco47I GGWCC 1 cut(s) 1101
Eco47III AGCGCT 1 cut(s) 283
Eco53kI GAGCTC 2 cut(s) 1258, 1390
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 2 cut(s) 1258, 1390
EcoO109I RGGNCCY 2 cut(s) 398, 1101
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 4 cut(s) 311, 339, 721, 1175
EcoT38I GRGCYC 2 cut(s) 1260, 1392
ErhI CCWWGG 4 cut(s) 311, 339, 721, 1175
Esp3I CGTCTC 1 cut(s) 881
FalI AAGNNNNNCTT 2 cut(s) 1450, 1482
FaqI GGGAC 1 cut(s) 1456
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 2 cut(s) 120, 214
FbaI TGATCA 1 cut(s) 163
FokI GGATG 8 cut(s) 392, 751, 944, 965, 980, 1052, 1058, 1207
FriOI GRGCYC 2 cut(s) 1260, 1392
FspAI RTGCGCAY 1 cut(s) 756
FspBI CTAG 2 cut(s) 62, 747
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 2 cut(s) 283, 756
GsaI CCCAGC 1 cut(s) 826
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 60, 399, 720, 1075
HapII CCGG 2 cut(s) 770, 1479
HhaI GCGC 2 cut(s) 284, 757
Hin6I GCGC 2 cut(s) 282, 755
HinP1I GCGC 2 cut(s) 282, 755
HindIII AAGCTT 1 cut(s) 1325
HinfI GANTC 2 cut(s) 601, 1171
HpaII CCGG 2 cut(s) 770, 1479
HphI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1403, 1468
Hpy166II GTNNAC 2 cut(s) 330, 1234
Hpy188I TCNGA 5 cut(s) 105, 394, 784, 850, 964
Hpy188III TCNNGA 2 cut(s) 35, 48
Hpy8I GTNNAC 2 cut(s) 330, 1234
HpyAV CCTTC 9 cut(s) 389, 481, 637, 789, 983, 995, 1338, 1378, 1476
HpyCH4III ACNGT 2 cut(s) 713, 730
HpyCH4V TGCA 8 cut(s) 76, 124, 197, 442, 588, 796, 1123, 1408
HpyF3I CTNAG 5 cut(s) 102, 242, 507, 1068, 1323
HspAI GCGC 2 cut(s) 282, 755
KpnI GGTACC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
LmnI GCTCC 4 cut(s) 743, 965, 1222, 1387
LweI GCATC 2 cut(s) 1110, 1417
MaeI CTAG 2 cut(s) 62, 747
MalI GATC 6 cut(s) 165, 236, 405, 898, 1154, 1404
MboI GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
MfeI CAATTG 3 cut(s) 791, 1127, 1214
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 2 cut(s) 1260, 1392
MluCI AATT 9 cut(s) 626, 667, 791, 871, 1020, 1127, 1214, 1394, 1441
MlyI GAGTC 1 cut(s) 1180
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 2 cut(s) 654, 1284
MslI CAYNNNNRTG 3 cut(s) 362, 1032, 1038
MspI CCGG 2 cut(s) 770, 1479
MspR9I CCNGG 2 cut(s) 261, 770
MunI CAATTG 3 cut(s) 791, 1127, 1214
Mva1269I GAATGC 1 cut(s) 1368
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 472
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 4 cut(s) 311, 339, 721, 1175
NdeI CATATG 2 cut(s) 120, 214
NdeII GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
NheI GCTAGC 1 cut(s) 746
NlaIV GGNNCC 5 cut(s) 6, 209, 898, 961, 1102
NsbI TGCGCA 1 cut(s) 756
PceI AGGCCT 1 cut(s) 60
PctI GAATGC 1 cut(s) 1368
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 601
PleI GAGTC 1 cut(s) 1179
PpsI GAGTC 1 cut(s) 1179
PpuMI RGGWCCY 1 cut(s) 1101
Psp124BI GAGCTC 2 cut(s) 1260, 1392
Psp5II RGGWCCY 1 cut(s) 1101
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 822
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 5 cut(s) 6, 209, 898, 961, 1102
PspPI GGNCC 2 cut(s) 398, 1101
PspPPI RGGWCCY 1 cut(s) 1101
PsrI GAACNNNNNNTAC 4 cut(s) 530, 562, 1226, 1258
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 896
RsaI GTAC 2 cut(s) 209, 548
RsaNI GTAC 2 cut(s) 208, 547
RseI CAYNNNNRTG 3 cut(s) 362, 1032, 1038
SacI GAGCTC 2 cut(s) 1260, 1392
SaqAI TTAA 2 cut(s) 654, 1284
Sau3AI GATC 6 cut(s) 163, 234, 403, 896, 1152, 1402
Sau96I GGNCC 2 cut(s) 398, 1101
SchI GAGTC 1 cut(s) 1180
ScrFI CCNGG 2 cut(s) 261, 770
SduI GDGCHC 2 cut(s) 1260, 1392
SfaNI GCATC 2 cut(s) 1110, 1417
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 1101
SmiMI CAYNNNNRTG 3 cut(s) 362, 1032, 1038
SmlI CTYRAG 3 cut(s) 1274, 1328, 1349
SmoI CTYRAG 3 cut(s) 1274, 1328, 1349
Sse9I AATT 9 cut(s) 626, 667, 791, 871, 1020, 1127, 1214, 1394, 1441
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 4 cut(s) 472, 717, 750, 1005
SspMI CTAG 2 cut(s) 62, 747
SstI GAGCTC 2 cut(s) 1260, 1392
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 259, 768
StyI CCWWGG 4 cut(s) 311, 339, 721, 1175
TaaI ACNGT 2 cut(s) 713, 730
TaqI TCGA 4 cut(s) 1010, 1254, 1260, 1392
TasI AATT 9 cut(s) 626, 667, 791, 871, 1020, 1127, 1214, 1394, 1441
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 654, 1284
Tru9I TTAA 2 cut(s) 654, 1284
TscAI CASTG 4 cut(s) 250, 733, 1141, 1196
TspDTI ATGAA 9 cut(s) 264, 270, 338, 656, 830, 948, 954, 1074, 1211
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 4 cut(s) 250, 733, 1141, 1196
VpaK11BI GGWCC 1 cut(s) 1101
XapI RAATTY 2 cut(s) 667, 1441
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 62, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.