Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

2122159 .. 2125309

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G027200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACGACTGCGGCTCGACCCACGTGGGCACCTGCAAAAGGTGGTAATGAACAAGGTGGTACTCGGATTTTTGGCCCTTCTCAGAAATACTCTTCAAGGGACATGGCGGCCCATACAACTCTAAAACCCAGAAAGGAGGGGCAAGATACCCAGGACGAGTTGCAGAAGAAGAACCTCCGAGAGGAGCTGGAAGAGCGTGAGAGGAAGCATTATTCATCAAAGGATAAATCGTATAGTTATGACAGAGATCGCAGGAGAGGAAGCCAGCTGTTGCTGGAAGGGGGCAGAAGGGACACTGAAATTGTGCCGCGTAATGTAGATGCTGATGATTCTGATGTGGAAGTCAAAAGTGATGATGAAAGTTCTGAAGATGATGATGATGATGATGAAGAAGCTCTGATGGCCGAGCTTGAACAAATTAGGAAGGAAAAAGCAGAGGAGAAGCTACGAAAGGAACGACAAGAGCGGGAGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGGAACCCATTGCTTAATGGTGCAACAGCCACATCCTTTAGTGTGAAAAGAAGATGGGATGATGATGTGGTGTTTAAAAATCAGGCCCGTGGTGAAACCAAGGCTCCAAAGCGCTTCATCAATGACACAGTCAGGAATGACTTTCACCGCAAATTCCTGCATAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

228

Amino Acids

26.48

Weight (kDa)

5.79

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	28
AccBSI	CCGCTC	1 cut(s)	466
AccII	CGCG	1 cut(s)	310
AciI	CCGC	5 cut(s)	11, 107, 308, 466, 655
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	61
AfeI	AGCGCT	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	2 cut(s)	96, 413
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	7 cut(s)	187, 268, 395, 409, 445, 478, 499
AluI	AGCT	7 cut(s)	187, 268, 395, 409, 445, 478, 499
Aor51HI	AGCGCT	1 cut(s)	620
AoxI	GGCC	4 cut(s)	73, 108, 402, 591
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	74, 109, 592
AsuHPI	GGTGA	2 cut(s)	611, 644
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	28
BbrPI	CACGTG	1 cut(s)	24
BccI	CCATC	2 cut(s)	394, 555
BciT130I	CCWGG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	12, 108, 308
BlsI	GCNGC	3 cut(s)	13, 109, 309
Bme1390I	CCNGG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	74, 109, 592
BmiI	GGNNCC	3 cut(s)	30, 512, 612
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	150, 505, 595, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	4 cut(s)	150, 505, 595, 606
BseGI	GGATG	2 cut(s)	539, 571
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	197, 452
BseSI	GKGCMC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	4 cut(s)	75, 110, 404, 593
BshNI	GGYRCC	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	113, 305
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
BsmFI	GGGAC	2 cut(s)	113, 305
BsnI	GGCC	4 cut(s)	75, 110, 404, 593
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	5 cut(s)	11, 107, 308, 466, 655
BspANI	GGCC	4 cut(s)	75, 110, 404, 593
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	30, 512, 612
BspMI	ACCTGC	1 cut(s)	40
BspQI	GCTCTTC	2 cut(s)	186, 468
BspT107I	GGYRCC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	4 cut(s)	150, 505, 595, 606
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	3 cut(s)	97, 186, 468
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	595
BstENI	CCTNNNNNAGG	2 cut(s)	36, 179
BstF5I	GGATG	2 cut(s)	539, 571
BstFNI	CGCG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 401
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	75, 110, 404, 593
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	539, 571
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	74, 109, 592
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	2 cut(s)	103, 676
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	97, 186, 468
EarI	CTCTTC	3 cut(s)	97, 186, 468
Eco130I	CCWWGG	1 cut(s)	606
Eco47III	AGCGCT	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 179
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	106, 679
FaiI	YATR	6 cut(s)	104, 114, 234, 240, 669, 677
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	2 cut(s)	113, 305
FatI	CATG	2 cut(s)	102, 675
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	12, 108, 308
FokI	GGATG	2 cut(s)	526, 578
Fsp4HI	GCNGC	3 cut(s)	12, 108, 308
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	3 cut(s)	12, 108, 308
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	4 cut(s)	75, 110, 404, 593
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	106, 679
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	2 cut(s)	611, 644
Hpy188I	TCNGA	7 cut(s)	66, 84, 179, 334, 367, 399, 506
Hpy188III	TCNNGA	1 cut(s)	640
HpyAV	CCTTC	4 cut(s)	87, 272, 282, 418
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	35, 163, 530, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 401
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	106, 679
HspAI	GCGC	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	2 cut(s)	186, 468
LmnI	GCTCC	2 cut(s)	184, 616
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	249
MbiI	CCGCTC	1 cut(s)	466
MboI	GATC	1 cut(s)	247
MboII	GAAGA	8 cut(s)	84, 178, 181, 203, 380, 401, 485, 570
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	300, 417, 659
MnlI	CCTC	8 cut(s)	130, 175, 185, 195, 251, 430, 463, 500
MseI	TTAA	3 cut(s)	480, 522, 582
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	193, 401
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	106, 679
NlaIV	GGNNCC	3 cut(s)	30, 512, 612
NmeAIII	GCCGAG	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	2 cut(s)	186, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	13, 109, 309
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	150
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	30, 512, 612
PspPI	GGNCC	3 cut(s)	74, 109, 592
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SapI	GCTCTTC	2 cut(s)	186, 468
SaqAI	TTAA	3 cut(s)	480, 522, 582
SatI	GCNGC	3 cut(s)	12, 108, 308
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	74, 109, 592
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	310
Sse9I	AATT	3 cut(s)	300, 417, 659
SsiI	CCGC	5 cut(s)	11, 107, 308, 466, 655
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	300, 417, 659
TauI	GCSGC	3 cut(s)	14, 110, 310
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	480, 522, 582
Tru9I	TTAA	3 cut(s)	480, 522, 582
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	5 cut(s)	63, 204, 372, 402, 613
TspRI	CASTG	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	635
XagI	CCTNNNNNAGG	2 cut(s)	36, 179
XapI	RAATTY	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.