Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Forward (+)

23929256 .. 23931813

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTGGGCCAACTGCCAAAAAAATCCCAATGGGCCAATAATTTTGTATACCAAACCGACCCGGAAGACCCAATCCGGGTACTTTATATATGTACCAGGACGAATTCCTCTCCTGCAAAATCAAATCGATTCGTTTAGGGAAATCAAAGCGACCAACCCTAGCTTCTCTCACTTCGACGCTATCTCCGGCAAAGGAACGCCGTCATCGAGCCAGTCACCGGCGGTATCTAAACAGATATACTCATCAAGGGACATTGCATCGCATACAACTCTAAAACCCAGAAAGGACGGGCAGGACACCCAGGATGAACTGCAGAAGAGGAACCTCCATGAGGAGTTGGAAGACCGTGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAGCTTTTGTTGGAAGGGACAAGAAGGGACACTGAAGACCGCATTGTACCACGTAATGTAGATGCTGATGATTCTGATTTGGAAGTCAAAAGTGATGATGACAGTGATGAAGATGACGATGATGATGAGGATGACACAGAAGCTCTTTTGGCTGAGCTAGAACAAATAAAGAGGGAAAGAGCAGAGGAGAAGCGTCGAAAGGAAGAACAACAGGTGGCGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAAACCCATTACTTAATAATCCAATAACTGCTTCTTCCTTCAGTGTGAAAAGAAGATGGGATGATGATGTGGTGTTCAAAAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAATGACACAGTGAGGAACGACTTTCACCGCAAATTTCTGCATAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

282

Amino Acids

32.89

Weight (kDa)

5.98

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	64 - 282	6.8e-66	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	4 cut(s)	221, 454, 632, 820
AcsI	RAATTY	2 cut(s)	102, 824
AcuI	CTGAAG	2 cut(s)	468, 694
AfaI	GTAC	3 cut(s)	80, 93, 462
AfeI	AGCGCT	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	75, 217, 331
AgsI	TTSAA	1 cut(s)	748
AjnI	CCWGG	2 cut(s)	94, 300
AjuI	GAANNNNNNNTTGG	4 cut(s)	146, 178, 685, 717
AluBI	AGCT	6 cut(s)	162, 418, 557, 571, 640, 661
AluI	AGCT	6 cut(s)	162, 418, 557, 571, 640, 661
Aor51HI	AGCGCT	1 cut(s)	785
AoxI	GGCC	3 cut(s)	6, 32, 756
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	2 cut(s)	102, 824
AspLEI	GCGC	1 cut(s)	786
AspS9I	GGNCC	3 cut(s)	6, 32, 757
AsuC2I	CCSGG	2 cut(s)	61, 76
AsuHPI	GGTGA	3 cut(s)	207, 776, 809
BbsI	GAAGAC	3 cut(s)	71, 348, 456
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	1 cut(s)	720
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	96, 302
BcnI	CCSGG	2 cut(s)	61, 76
BfaI	CTAG	2 cut(s)	159, 572
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	787
BisI	GCNGC	1 cut(s)	400
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	4 cut(s)	61, 76, 96, 302
BmgT120I	GGNCC	3 cut(s)	6, 32, 757
BmiI	GGNNCC	2 cut(s)	323, 413
BmrFI	CCNGG	4 cut(s)	61, 76, 96, 302
BmsI	GCATC	2 cut(s)	266, 466
BpiI	GAAGAC	3 cut(s)	71, 348, 456
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	61, 76
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	300, 667, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 760, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 217, 331
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	96, 302
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	300, 667, 760
BseGI	GGATG	3 cut(s)	310, 550, 736
BseLI	CCNNNNNNNGG	3 cut(s)	75, 217, 331
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	347, 367, 614
BseXI	GCAGC	1 cut(s)	411
BshFI	GGCC	3 cut(s)	8, 34, 758
BshVI	ATCGAT	1 cut(s)	126
BsiSI	CCGG	4 cut(s)	61, 75, 186, 218
BslFI	GGGAC	3 cut(s)	263, 445, 455
BslI	CCNNNNNNNGG	3 cut(s)	75, 217, 331
BsmFI	GGGAC	3 cut(s)	263, 445, 455
BsnI	GGCC	3 cut(s)	8, 34, 758
Bsp143I	GATC	1 cut(s)	394
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	4 cut(s)	221, 454, 632, 820
BspANI	GGCC	3 cut(s)	8, 34, 758
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	323, 413
BspMAI	CTGCAG	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	300, 667, 760
BssMI	GATC	1 cut(s)	394
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	96, 302
Bst4CI	ACNGT	3 cut(s)	347, 518, 802
Bst6I	CTCTTC	2 cut(s)	311, 630
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	567, 780
BstDSI	CCRYGG	1 cut(s)	760
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	3 cut(s)	310, 550, 736
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	1 cut(s)	786
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	96, 302
BstSCI	CCNGG	4 cut(s)	59, 74, 94, 300
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	3 cut(s)	71, 348, 456
BstZ17I	GTATAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	8, 34, 758
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	760
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	310, 550, 736
BtsIMutI	CAGTG	4 cut(s)	444, 523, 718, 807
Cac8I	GCNNGC	1 cut(s)	416
CfoI	GCGC	1 cut(s)	786
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	6, 32, 757
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	2 cut(s)	185, 596
Csp6I	GTAC	3 cut(s)	79, 92, 461
CviAII	CATG	2 cut(s)	329, 841
CviQI	GTAC	3 cut(s)	79, 92, 461
DdeI	CTNAG	2 cut(s)	567, 780
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	311, 630
EarI	CTCTTC	2 cut(s)	311, 630
EciI	GGCGGA	1 cut(s)	647
Eco47III	AGCGCT	1 cut(s)	785
Eco57I	CTGAAG	2 cut(s)	468, 694
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	94, 300
FaeI	CATG	2 cut(s)	332, 844
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	3 cut(s)	263, 445, 455
FatI	CATG	2 cut(s)	328, 840
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	3 cut(s)	317, 557, 743
Fsp4HI	GCNGC	1 cut(s)	400
FspBI	CTAG	2 cut(s)	159, 572
GlaI	GCGC	1 cut(s)	785
GluI	GCNGC	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	3 cut(s)	8, 34, 758
HapII	CCGG	4 cut(s)	61, 75, 186, 218
HgaI	GACGC	2 cut(s)	185, 596
HhaI	GCGC	1 cut(s)	786
Hin1II	CATG	2 cut(s)	332, 844
Hin6I	GCGC	1 cut(s)	784
HinP1I	GCGC	1 cut(s)	784
HinfI	GANTC	3 cut(s)	128, 485, 775
HpaII	CCGG	4 cut(s)	61, 75, 186, 218
HphI	GGTGA	3 cut(s)	207, 776, 809
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	490, 668
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	2 cut(s)	179, 612
HpyAV	CCTTC	3 cut(s)	422, 432, 718
HpyCH4III	ACNGT	3 cut(s)	347, 518, 802
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	115, 257, 313, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	567, 780
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	2 cut(s)	332, 844
HspAI	GCGC	1 cut(s)	784
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	266, 466
MaeI	CTAG	2 cut(s)	159, 572
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	9 cut(s)	76, 328, 353, 461, 536, 629, 647, 696, 735
MluCI	AATT	3 cut(s)	39, 102, 824
MlyI	GAGTC	1 cut(s)	769
MmeI	TCCRAC	2 cut(s)	318, 405
MseI	TTAA	2 cut(s)	642, 684
MspI	CCGG	4 cut(s)	61, 75, 186, 218
MspR9I	CCNGG	4 cut(s)	61, 76, 96, 302
MvaI	CCWGG	2 cut(s)	96, 302
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	2 cut(s)	61, 76
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	2 cut(s)	332, 844
NlaIV	GGNNCC	2 cut(s)	323, 413
NmuCI	GTSAC	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	128, 485
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
Ppu21I	YACGTR	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	94, 300
PspGI	CCWGG	2 cut(s)	94, 300
PspN4I	GGNNCC	2 cut(s)	323, 413
PspPI	GGNCC	3 cut(s)	6, 32, 757
PstI	CTGCAG	1 cut(s)	315
RsaI	GTAC	3 cut(s)	80, 93, 462
RsaNI	GTAC	3 cut(s)	79, 92, 461
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	2 cut(s)	642, 684
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	3 cut(s)	6, 32, 757
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	4 cut(s)	61, 76, 96, 302
SetI	ASST	9 cut(s)	164, 327, 420, 469, 559, 573, 630, 642, 663
SfaNI	GCATC	2 cut(s)	266, 466
SfcI	CTRYAG	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	39, 102, 824
SsiI	CCGC	4 cut(s)	221, 454, 632, 820
SspMI	CTAG	2 cut(s)	159, 572
StyD4I	CCNGG	4 cut(s)	59, 74, 94, 300
TaaI	ACNGT	3 cut(s)	347, 518, 802
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	126, 174, 206, 610
TasI	AATT	3 cut(s)	39, 102, 824
TfiI	GAWTC	2 cut(s)	128, 485
Tru1I	TTAA	2 cut(s)	642, 684
Tru9I	TTAA	2 cut(s)	642, 684
TscAI	CASTG	4 cut(s)	451, 523, 718, 807
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	4 cut(s)	321, 354, 537, 778
TspRI	CASTG	4 cut(s)	451, 523, 718, 807
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	102, 824
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	159, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.