Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Reverse (-)

10874170 .. 10877142

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGAGGTTCTTCTTCCCCAGAAGAGACGGAAGCTAGAGACGCACCGCCCAAGCTAGCTGAAGGTCGTGGAAGCTGCAAGAGTGGAAAAATGGATAATGTTTACACACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCTATCAATACCCTGGAACCTGTCCTTCGGGCAACGAACAGAAACAATGAGAACTATTGTTCTCCAAATGTTCCAACAATGACAAAAATTCTGCTTGAGGATGTCGAAAAGATTTTCAAGACTACTACTGGAACTCCATTTATGATAGCTACCACAGCCACTCAAAAGAATGATGTGCACTATCCAACTCATCTTACTAGCTTCGTATTGTTATCAAACCAAAGCCATGCCTTGGCGGAGGCCTTCTGTGCACCCCACAGTAGATTTGCTACCATGTTCTTGGGTTGGTTCATGGAATCTGGACCCCTATTCCTCGAATTGCGAGTTTATATGAAAGACTATATTGCCACCCCCAAACCTAATGGCTATCAGAGTCTCCAGACAACTGTAATCCCTTTCTTGTATGAGAGCATGTTGCGGCTTGAAGTGCAGGGGTTGGCTGTTGTTGCAATATTGAGGCACTTTAGATACCCTTGCAGGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

208

Amino Acids

23.42

Weight (kDa)

8.67

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	370
AciI	CCGC	3 cut(s)	47, 374, 556
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	256, 563
AjnI	CCWGG	3 cut(s)	109, 133, 150
AluBI	AGCT	6 cut(s)	35, 55, 59, 75, 287, 339
AluI	AGCT	6 cut(s)	35, 55, 59, 75, 287, 339
Alw21I	GWGCWC	2 cut(s)	318, 391
Alw26I	GTCTC	3 cut(s)	20, 33, 518
Alw44I	GTGCAC	2 cut(s)	314, 387
AoxI	GGCC	2 cut(s)	137, 378
ApaLI	GTGCAC	2 cut(s)	314, 387
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	137, 440
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	318, 391
Bbv12I	GWGCWC	2 cut(s)	318, 391
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	129
BciT130I	CCWGG	3 cut(s)	111, 135, 152
BcoDI	GTCTC	3 cut(s)	20, 33, 518
BfaI	CTAG	3 cut(s)	36, 56, 336
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	2 cut(s)	76, 557
BlsI	GCNGC	2 cut(s)	77, 558
Bme1390I	CCNGG	3 cut(s)	111, 135, 152
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	137, 440
BmiI	GGNNCC	3 cut(s)	119, 156, 442
BmrFI	CCNGG	3 cut(s)	111, 135, 152
BmtI	GCTAGC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	134, 150, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	111, 135, 152
BseDI	CCNNGG	3 cut(s)	134, 150, 369
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	271
BseSI	GKGCMC	2 cut(s)	318, 391
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	139, 380
BsiHKAI	GWGCWC	2 cut(s)	318, 391
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	3 cut(s)	20, 33, 518
BsmBI	CGTCTC	2 cut(s)	20, 33
BsnI	GGCC	2 cut(s)	139, 380
Bsp1286I	GDGCHC	2 cut(s)	318, 391
BspACI	CCGC	3 cut(s)	47, 374, 556
BspANI	GGCC	2 cut(s)	139, 380
BspLI	GGNNCC	3 cut(s)	119, 156, 442
BspMI	ACCTGC	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	134, 150, 369
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	111, 135, 152
Bst4CI	ACNGT	2 cut(s)	398, 526
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	244
BstMAI	GTCTC	3 cut(s)	20, 33, 518
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 293, 386, 565, 584
BstNI	CCWGG	3 cut(s)	111, 135, 152
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	3 cut(s)	109, 133, 150
BstSLI	GKGCMC	2 cut(s)	318, 391
BstV1I	GCAGC	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	139, 380
BtsCI	GGATG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	137, 440
CseI	GACGC	1 cut(s)	50
CviAII	CATG	4 cut(s)	365, 412, 430, 550
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	109, 133, 150
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	2 cut(s)	20, 33
FaeI	CATG	4 cut(s)	368, 415, 433, 553
FaiI	YATR	9 cut(s)	281, 366, 413, 431, 468, 470, 480, 543, 551
FatI	CATG	4 cut(s)	364, 411, 429, 549
Fnu4HI	GCNGC	2 cut(s)	76, 557
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	76, 557
FspBI	CTAG	3 cut(s)	36, 56, 336
GluI	GCNGC	2 cut(s)	76, 557
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	139, 380
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	368, 415, 433, 553
HinfI	GANTC	2 cut(s)	434, 511
Hpy166II	GTNNAC	3 cut(s)	103, 316, 389
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	3 cut(s)	256, 438, 517
Hpy8I	GTNNAC	3 cut(s)	103, 316, 389
HpyAV	CCTTC	4 cut(s)	56, 108, 173, 391
HpyCH4III	ACNGT	2 cut(s)	398, 526
HpyCH4V	TGCA	6 cut(s)	78, 316, 389, 568, 587, 615
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 293, 386, 565, 584
Hsp92II	CATG	4 cut(s)	368, 415, 433, 553
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	36, 56, 336
MboII	GAAGA	3 cut(s)	3, 6, 35
MhlI	GDGCHC	2 cut(s)	318, 391
MluCI	AATT	2 cut(s)	225, 455
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	2 cut(s)	236, 347
MnlI	CCTC	4 cut(s)	229, 370, 461, 588
MspR9I	CCNGG	3 cut(s)	111, 135, 152
MvaI	CCWGG	3 cut(s)	111, 135, 152
MwoI	GCNNNNNNNGC	5 cut(s)	41, 293, 386, 565, 584
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	368, 415, 433, 553
NlaIV	GGNNCC	3 cut(s)	119, 156, 442
NspI	RCATGY	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	77, 558
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
Psp6I	CCWGG	3 cut(s)	109, 133, 150
PspGI	CCWGG	3 cut(s)	109, 133, 150
PspN4I	GGNNCC	3 cut(s)	119, 156, 442
PspPI	GGNCC	2 cut(s)	137, 440
SatI	GCNGC	2 cut(s)	76, 557
Sau96I	GGNCC	2 cut(s)	137, 440
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	3 cut(s)	111, 135, 152
SduI	GDGCHC	2 cut(s)	318, 391
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	225, 455
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	3 cut(s)	47, 374, 556
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	3 cut(s)	36, 56, 336
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	109, 133, 150
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	398, 526
TaqI	TCGA	2 cut(s)	243, 453
TasI	AATT	2 cut(s)	225, 455
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	418, 485, 610
TspGWI	ACGGA	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	370
VneI	GTGCAC	2 cut(s)	314, 387
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	553
XspI	CTAG	3 cut(s)	36, 56, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.