Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006245

Physical Location & Seq

Genomic Coordinates Forward (+)

25499850 .. 25501661

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACGACCGCAGCTCGACCCACGTGGGCTCCTGCAAAAGGTGGTAATGAACAAGGTGGTACTCGGATTTTTGGCCCATCCCAAAAGTACTCATCAAGGGACATTGCATCCCATACAACTCTAAAACCCAGAAAGGACGGGCAGGACACCCAGGATGAACTGCAGAAGAGGAACCTCCAGGAGGAGTTGGAAGACCGTGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAGCTTTTGTTGGAAGGGACAAGAAGGGACACTGAAGACCGCATTGTACCACGTAATGTAGATGCTGATGATTCTGATTTGGAAGTCAAAAGTGATGATGACAGTGATGAAGATGACGATGATGATGAGGATGACACAGAAGCTCTTTTGGCTGAGCTAGAACAAATAAAGAGGGAAAGAGCAGAGGAGAAGCGTCGGAAGGAAGAACAAGAGGTTGCGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAAACCCATTACTTAATAATCCAATAACCGCTTCTTCCTTCAGTGTGAAAAGAAGATGGGATGATGATGTGGTGTTCAAAAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAATGACACAGTGAGGAACGACTTTCATCGCAAATTTCTGCATAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

232

Amino Acids

27.14

Weight (kDa)

5.3

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	1 - 232	1.1e-76	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13200
fragaria_vesca	FvH4_6g22570
malus_domestica	MD03G1032500.v1.1 MD11G1036400.v1.1
prunus_persica	Prupe.6G027200_v2.0.a1
pyrus_communis	pycom03g02600 pycom11g03000
rosa_chinensis	RchiOBHm_Chr1g0318721 RchiOBHm_Chr3g0480061
rosa_multiflora	Rmu_sc0006604.1_g000016
rosa_roxburghii	Rroxscaffold_6G00401790
rosa_rugosa	Rorug03G0180600 Rorug04G0070600
rosa_samantha	Rh1AG036000 Rh1AG156900 Rh1CG245400 Rh3AG231400 Rh3BG263800 Rh3CG261300 Rh3CG261400 Rh3DG257200 Rh6AG167400 Rh6BG175000 Rh7DG315900
rosa_wichuraiana	Rw1G004300 Rw3G020810 Rw7G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 304, 482, 549
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	2 cut(s)	318, 544
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	3 cut(s)	61, 89, 312
AfeI	AGCGCT	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	2 cut(s)	150, 177
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AluBI	AGCT	6 cut(s)	14, 268, 407, 421, 490, 511
AluI	AGCT	6 cut(s)	14, 268, 407, 421, 490, 511
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	2 cut(s)	73, 606
ApeKI	GCWGC	2 cut(s)	11, 249
ApoI	RAATTY	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	74, 607
AsuHPI	GGTGA	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	31
BbrPI	CACGTG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	198, 306
BbvI	GCAGC	2 cut(s)	23, 261
BccI	CCATC	2 cut(s)	85, 570
BciT130I	CCWGG	2 cut(s)	152, 179
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	2 cut(s)	12, 250
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	13, 251
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	152, 179
BmgT120I	GGNCC	2 cut(s)	74, 607
BmiI	GGNNCC	3 cut(s)	30, 173, 263
BmrFI	CCNGG	2 cut(s)	152, 179
BmsI	GCATC	2 cut(s)	116, 316
BpiI	GAAGAC	2 cut(s)	198, 306
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaAI	YACGTR	2 cut(s)	24, 317
BsaJI	CCNNGG	3 cut(s)	150, 517, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 610, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	152, 179
BseDI	CCNNGG	3 cut(s)	150, 517, 610
BseGI	GGATG	5 cut(s)	77, 107, 160, 400, 586
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	3 cut(s)	197, 217, 464
BseXI	GCAGC	2 cut(s)	23, 261
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	75, 608
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	113, 295, 305
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
BsmFI	GGGAC	3 cut(s)	113, 295, 305
BsnI	GGCC	2 cut(s)	75, 608
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	4 cut(s)	9, 304, 482, 549
BspANI	GGCC	2 cut(s)	75, 608
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	30, 173, 263
BspMAI	CTGCAG	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	150, 517, 610
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	152, 179
Bst4CI	ACNGT	3 cut(s)	197, 368, 652
Bst6I	CTCTTC	2 cut(s)	161, 480
BstBAI	YACGTR	2 cut(s)	24, 317
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	417, 630
BstDSI	CCRYGG	1 cut(s)	610
BstENI	CCTNNNNNAGG	2 cut(s)	36, 179
BstF5I	GGATG	5 cut(s)	77, 107, 160, 400, 586
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	152, 179
BstSCI	CCNGG	2 cut(s)	150, 177
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	23, 261
BstV2I	GAAGAC	2 cut(s)	198, 306
BsuRI	GGCC	2 cut(s)	75, 608
BtgI	CCRYGG	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	5 cut(s)	77, 107, 160, 400, 586
BtsIMutI	CAGTG	4 cut(s)	294, 373, 568, 657
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	74, 607
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	60, 88, 311
CviAII	CATG	1 cut(s)	691
CviQI	GTAC	3 cut(s)	60, 88, 311
DdeI	CTNAG	2 cut(s)	417, 630
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	161, 480
EarI	CTCTTC	2 cut(s)	161, 480
Eco24I	GRGCYC	1 cut(s)	31
Eco47III	AGCGCT	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	318, 544
Eco72I	CACGTG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 179
EcoRII	CCWGG	2 cut(s)	150, 177
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	1 cut(s)	694
FaiI	YATR	5 cut(s)	114, 231, 237, 684, 692
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	3 cut(s)	113, 295, 305
FatI	CATG	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	12, 250
FokI	GGATG	5 cut(s)	64, 94, 167, 407, 593
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	12, 250
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	2 cut(s)	12, 250
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	2 cut(s)	75, 608
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	335, 625
HphI	GGTGA	1 cut(s)	626
Hpy188I	TCNGA	4 cut(s)	66, 340, 462, 518
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	272, 282, 457, 568
HpyCH4III	ACNGT	3 cut(s)	197, 368, 652
HpyCH4IV	ACGT	2 cut(s)	23, 316
HpyCH4V	TGCA	4 cut(s)	35, 107, 163, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	417, 630
HpySE526I	ACGT	2 cut(s)	23, 316
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	2 cut(s)	34, 261
Lsp1109I	GCAGC	2 cut(s)	23, 261
LweI	GCATC	2 cut(s)	116, 316
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	23, 316
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	8 cut(s)	178, 203, 311, 386, 479, 497, 546, 585
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	3 cut(s)	168, 255, 440
MseI	TTAA	2 cut(s)	492, 534
MspR9I	CCNGG	2 cut(s)	152, 179
MvaI	CCWGG	2 cut(s)	152, 179
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	3 cut(s)	30, 173, 263
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	13, 251
PleI	GAGTC	1 cut(s)	619
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	619
Ppu21I	YACGTR	2 cut(s)	24, 317
Psp6I	CCWGG	2 cut(s)	150, 177
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	150, 177
PspN4I	GGNNCC	3 cut(s)	30, 173, 263
PspPI	GGNCC	2 cut(s)	74, 607
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	3 cut(s)	61, 89, 312
RsaNI	GTAC	3 cut(s)	60, 88, 311
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	492, 534
SatI	GCNGC	2 cut(s)	12, 250
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	74, 607
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	152, 179
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	116, 316
SfcI	CTRYAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	674
SsiI	CCGC	4 cut(s)	9, 304, 482, 549
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	150, 177
TaaI	ACNGT	3 cut(s)	197, 368, 652
TaiI	ACGT	2 cut(s)	26, 319
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	674
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	492, 534
Tru9I	TTAA	2 cut(s)	492, 534
TscAI	CASTG	4 cut(s)	301, 373, 568, 657
TseI	GCWGC	2 cut(s)	11, 249
TspDTI	ATGAA	6 cut(s)	63, 171, 204, 387, 628, 656
TspRI	CASTG	4 cut(s)	301, 373, 568, 657
XagI	CCTNNNNNAGG	2 cut(s)	36, 179
XapI	RAATTY	1 cut(s)	674
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.