Rh1AG156900

Protein CWC15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006245
Physical Location & Seq
Forward (+)
29529346 .. 29530189
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG156900.1

Sequence Viewer

Length: 330 bp
ATGACGACTGCAGCTCGACCCACGTGGGCTCCTGCGAAAGGTGGTAATGAACAAGGTGGTACTCGGATTTTTGGCCCATCGCAAAAGTACTCATCAAGGGACATTGCATCCCATACAACTCTAAAACCCAAAAAGGACGGAAAGGACACCCAGGAAGAACTGCAGAAAAGGAACCTCCAGGAGGAGTTGGAAGACCATGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAGCTTTTGTTGGAAAATCCTGCTGCAGAGCATTTTGACTACCCTGTGGGCTGTGGCTTTAGGTAA

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

9.1

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cwf_Cwc_15 PF04889 1 - 83 3e-22 Cwf15/Cwc15 cell cycle control protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 24
AfaI GTAC 2 cut(s) 61, 89
AfiI CCNNNNNNNGG 2 cut(s) 38, 181
AjnI CCWGG 2 cut(s) 150, 177
AluBI AGCT 2 cut(s) 14, 268
AluI AGCT 2 cut(s) 14, 268
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 11, 249, 287
AspS9I GGNCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 23, 261, 274
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 152, 179
BfmI CTRYAG 3 cut(s) 9, 161, 288
BisI GCNGC 3 cut(s) 12, 250, 288
BlsI GCNGC 3 cut(s) 13, 251, 289
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 152, 179
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 30, 173, 263
BmrFI CCNGG 2 cut(s) 152, 179
BmsI GCATC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 181
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 152, 179
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 38, 181
BseMI GCAATG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 197, 217
BseXI GCAGC 3 cut(s) 23, 261, 274
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 38, 181
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 244
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 30, 173, 263
BspMAI CTGCAG 3 cut(s) 13, 165, 292
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 152, 179
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 266
BstENI CCTNNNNNAGG 2 cut(s) 36, 179
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 152, 179
BstSCI CCNGG 2 cut(s) 150, 177
BstSFI CTRYAG 3 cut(s) 9, 161, 288
BstV1I GCAGC 3 cut(s) 23, 261, 274
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 60, 88
CviAII CATG 1 cut(s) 197
CviJI RGCY 7 cut(s) 14, 29, 75, 264, 268, 315, 321
CviKI_1 RGCY 7 cut(s) 14, 29, 75, 264, 268, 315, 321
CviQI GTAC 2 cut(s) 60, 88
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 31
Eco72I CACGTG 1 cut(s) 24
EcoNI CCTNNNNNAGG 2 cut(s) 36, 179
EcoRII CCWGG 2 cut(s) 150, 177
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 200
FaiI YATR 4 cut(s) 114, 198, 231, 237
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 12, 250, 288
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 12, 250, 288
GluI GCNGC 3 cut(s) 12, 250, 288
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 11, 107, 163, 290
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 34, 261
LpnPI CCDG 9 cut(s) 45, 137, 164, 164, 191, 238, 278, 297, 321
Lsp1109I GCAGC 3 cut(s) 23, 261, 274
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 2 cut(s) 167, 203
MhlI GDGCHC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 168, 255
MnlI CCTC 5 cut(s) 175, 185, 195, 198, 251
MspR9I CCNGG 2 cut(s) 152, 179
MvaI CCWGG 2 cut(s) 152, 179
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 3 cut(s) 30, 173, 263
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 3 cut(s) 13, 251, 289
PmaCI CACGTG 1 cut(s) 24
PmlI CACGTG 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 150, 177
PspCI CACGTG 1 cut(s) 24
PspGI CCWGG 2 cut(s) 150, 177
PspN4I GGNNCC 3 cut(s) 30, 173, 263
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 3 cut(s) 13, 165, 292
RsaI GTAC 2 cut(s) 61, 89
RsaNI GTAC 2 cut(s) 60, 88
SatI GCNGC 3 cut(s) 12, 250, 288
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 152, 179
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 16, 26, 43, 58, 177, 270, 329
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 3 cut(s) 9, 161, 288
StyD4I CCNGG 2 cut(s) 150, 177
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 16
TatI WGTACW 1 cut(s) 87
TseI GCWGC 3 cut(s) 11, 249, 287
TspDTI ATGAA 2 cut(s) 63, 204
TspGWI ACGGA 1 cut(s) 153
XagI CCTNNNNNAGG 2 cut(s) 36, 179
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.