Rh7DG315900

Protein CWC15 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006245
Physical Location & Seq
Reverse (-)
37101244 .. 37120225
18982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG315900.1

Sequence Viewer

Length: 588 bp
ATGACGACTGCAGCTCGACCCACGAGGGCTCCTGCGAAAGCTGGTAATGAACAAGGTGGTACTCAGATTTTTGGCCCATGCCAAAAGTACTCATCAAGGGACATTGCATCCCATACAACTCTAAAACCCAAAAAGGACGGAAAGGACATCCAGGAAGAATTGCAGAAAAGGAACCTCCAGGAGGAGTTGGAAGACCATGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAACTTTTGTTGGAAAGGATAAGAAGGGACACTAAAGACTGCGTTATACCACGTAATGTAGATGCTGATGATTCTGATATGGAAGTCAAAAGTGATGATGACAGACACCTTGAAGATAATCTGGATGATTGGCTTGCAGAGGGATTGGAGGATTACCTAGATGATGACTACTTAGTTTTTGACTGCCCAGATAGCCACAAACAACAAATAATAAGATGGATTGATGGCACGGGACAGCTGTCAACTGCATTTGACTTCACAACCAAGGGAGTTCTTCAGCCATCATCATTTTCAACAACGATGATGGATGAGGGTTTTGCCTAA

Protein Analysis

195

Amino Acids

22.43

Weight (kDa)

4.87

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cwf_Cwc_15 PF04889 1 - 127 2.7e-19 Cwf15/Cwc15 cell cycle control protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 2 cut(s) 61, 89
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 377, 558
AjnI CCWGG 2 cut(s) 150, 177
AluBI AGCT 3 cut(s) 14, 41, 502
AluI AGCT 3 cut(s) 14, 41, 502
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 11, 249
AspS9I GGNCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 31
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 23, 261
BccI CCATC 4 cut(s) 474, 482, 553, 562
BciT130I CCWGG 2 cut(s) 152, 179
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 12, 250
BlsI GCNGC 2 cut(s) 13, 251
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 152, 179
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 30, 173, 263
BmrFI CCNGG 2 cut(s) 152, 179
BmsI GCATC 2 cut(s) 116, 316
BoxI GACNNNNGTC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 528
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 152, 179
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 4 cut(s) 107, 147, 394, 577
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 197, 217
BseXI GCAGC 2 cut(s) 23, 261
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 3 cut(s) 113, 305, 510
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 113, 305, 510
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 244
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 30, 173, 263
BspMAI CTGCAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 152, 179
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 63, 436
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 4 cut(s) 107, 147, 394, 577
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 2 cut(s) 152, 179
BstPAI GACNNNNGTC 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 150, 177
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 23, 261
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 4 cut(s) 107, 147, 394, 577
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 60, 88
CviAII CATG 2 cut(s) 78, 197
CviJI RGCY 9 cut(s) 14, 29, 41, 75, 264, 397, 459, 502, 544
CviKI_1 RGCY 9 cut(s) 14, 29, 41, 75, 264, 397, 459, 502, 544
CviQI GTAC 2 cut(s) 60, 88
DdeI CTNAG 2 cut(s) 63, 436
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 524
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 150, 177
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 81, 200
FaiI YATR 7 cut(s) 79, 114, 198, 231, 237, 311, 344
FaqI GGGAC 3 cut(s) 113, 305, 510
FatI CATG 2 cut(s) 77, 196
Fnu4HI GCNGC 2 cut(s) 12, 250
FokI GGATG 4 cut(s) 94, 134, 401, 584
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 12, 250
FspBI CTAG 1 cut(s) 422
GluI GCNGC 2 cut(s) 12, 250
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 2 cut(s) 81, 200
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 2 cut(s) 66, 340
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 11, 107, 163, 401, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 2 cut(s) 63, 436
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 2 cut(s) 81, 200
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 34, 261
LpnPI CCDG 9 cut(s) 27, 45, 137, 164, 164, 191, 238, 371, 465
Lsp1109I GCAGC 2 cut(s) 23, 261
LweI GCATC 2 cut(s) 116, 316
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 316
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 167, 203, 389, 530
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 168, 255
MnlI CCTC 9 cut(s) 18, 175, 185, 195, 198, 251, 397, 406, 568
MspA1I CMGCKG 1 cut(s) 502
MspR9I CCNGG 2 cut(s) 152, 179
MvaI CCWGG 2 cut(s) 152, 179
MwoI GCNNNNNNNGC 1 cut(s) 456
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 81, 200
NlaIV GGNNCC 3 cut(s) 30, 173, 263
PfeI GAWTC 1 cut(s) 335
PfoI TCCNGGA 2 cut(s) 150, 177
PkrI GCNGC 2 cut(s) 13, 251
Ppu21I YACGTR 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 150, 177
PspGI CCWGG 2 cut(s) 150, 177
PspN4I GGNNCC 3 cut(s) 30, 173, 263
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 61, 89
RsaNI GTAC 2 cut(s) 60, 88
SatI GCNGC 2 cut(s) 12, 250
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 152, 179
SduI GDGCHC 1 cut(s) 31
SetI ASST 8 cut(s) 16, 43, 58, 177, 319, 375, 423, 504
SfaNI GCATC 2 cut(s) 116, 316
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 158
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 150, 177
StyI CCWWGG 1 cut(s) 528
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 158
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 335
TseI GCWGC 2 cut(s) 11, 249
TspDTI ATGAA 2 cut(s) 63, 204
TspGWI ACGGA 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 179
XspI CTAG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.