Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002910

Physical Location & Seq

Genomic Coordinates Forward (+)

4244900 .. 4247846

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGCCTCCGGCAAAGATTCCGATCGTAACCTAGGGTACATGACCCGCAAGGATGCAGAATTGAAGCTTCCACGGATGACCCAGGTCAAAAACAAGACTCCGGCGCCAATCCAAATCACCGCCGAGCAGATACTTAGAGAAGCGCGAGAGAGGCAAGAGGCTGAGTTCCGTCCGCCTAATCAGACAATCACTGACTCAGCTGAGCTTTCCGACTACAGACTCCGACGTCGGAAGGAGTTCGAAGACCAGATTCGCCGTGCGAGATTGAACACCCAAGTTTGGGTCAAGTACGCCGATTTTGAGATGAAGAACAAGTCTGTCAACGAAGCGAGGAACGTTTGGGATCGTGCTGTTTCGCTCCTCCCTCGAGTGGACCAGCTTTGGTACAAGTTTATTCACATGGAAGAGAAACTTGGTAATATTGCCGGCGCTAGACAGATACTCGAGCGTTGGATTCATTGTTCACCTGATCAACAAGCTTGGCTCTGCTTTATTAAATTCGAACTTAAGTATAATGAAATCGAATGTGCTAGATCGATATACGAGAGATTTGTTCTTTGTCATCCGAAGGTTTCTGCTTATATTCGATATGCAAAGTTTGAGATGAAGCATGGTCAAGTTGAGCTTGCTATGAAAGTGTTCGAACGCGCCAAGAAGGAGCTTGCAGACGATGAAGAAGCTGAGATTCTCTTTGTGGCGTTCGCTGAATTTGAAGAACAATACAAGTTTGCTCTTGATCAGATTCCTAAAGGAAGAGCTGAAAATTTGTACAGCAAGTTTGTGGCGTTTGAGAAACAGAATGGGGATAAGGAAGGGATTGAGGATGCCATTATTGGGAAGAGGAGGTGTCAGTATGAAGATGAAGTGAGGAAGAACCCTTTGAACTATGATTCGTGGTTCGATTTCGTTAGGTTAGAAGAGACTGTTGGGAACAAAGATAGGATAAGAGAAATCTATGAGAGGGCTGTTGCTAATGTTCCACCTCCCGAAGCCCAAGAGAAACGATACTGGCAAAGATACATATATCTCTGGATTAATTATGCTTTTTTTGCAGAGATGGTAACTGAAGATGTGGAGAGCACACGAGATGTTTACAGAGCATGCCTCAAGCTTATCCCCCACTCCAAATTTTCTTTTGCCAAAATATGGTTGCTCGCTGCACAACATGAAATCAGGCAATTGAATCTCACGGGTGCACGGCAGATATTAGGAAATGCGATTGGGAAAGCTCCAAAAGATAAGATATTCAAGAAATACATTGAGATCGAACTCCAGTTGAGAAATATAGATAGGTGTAGAAAATTATATGAGCGGTATCTTGAATGGTCTCCTGGGAATTGCTATGCTTGGAGAAAATATGCTGAGTTCGAGATGTCTCTTGCTGAAACAGAGCGAACTAGAGCTATCTTTGAACTTGCAATATCTCAGCCTGCTCTAGACATGCCCGAGCTGCTATGGAAGACGTACATTGATTTTGAGATATCAGAAGGGGAATTAGAGAGGACACGGGCTTTATATGAGAGACTCTTGGACCGTACAAAGCATTGCAAGGTGTGGGTTGACTTTGCAAAGTTTGAAGCGTCTGCTGCGGAACACAAAGAAGACGAGGAAGAAGAAGATGCTATTGAACGCAAAAAAGATGGCATCAAACGCGCCAGAGAGATATTCGACAGAGCCAACACATACAACAAAGACTCCACACCAGAGCTGAAAGAAGAGCGTGCTATGCTTTTGGAGGATTGGCTTAACATGGAGACGGGCTTTGGTAAGCTCGGGGATGTTAGAGTCGTTCAATCGAAGCTCCCGAAGAAGGTCAAGAAGAGAAAGCTGAGCAGTAGAGAAGATGGCTGTACAGAGTATGAAGAATACACTGATTATTTGTTCCCCGAAGAATCAGAGACAACGAGTCTTAAGATTCTTGAAGCTGCTCATAAATGGAAGAAGCAGAAGGTTAAAGCTGGGGAATGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT TPR_8

Protein Analysis

657

Amino Acids

78.1

Weight (kDa)

6.82

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_C	PF23231	75 - 191	3.5e-06	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	79 - 135	1.8e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	80 - 156	1.1e-08	PRP39 C-terminal HAT repeat
Suf	PF05843	89 - 270	9.6e-06	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	104 - 190	2.4e-10	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	159 - 242	7e-06	PRP39 C-terminal HAT repeat
HAT	PF02184	173 - 201	2.6e-11	HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_N	PF23233	283 - 444	7.7e-13	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	349 - 503	7.3e-10	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	416 - 513	3.6e-13	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	486 - 584	3.4e-08	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13210 AT5G41770 AT5G45990 AT5G45990
fragaria_vesca	FvH4_3g03250 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070 FvH4_5g04070
malus_domestica	MD06G1102000.v1.1 MD14G1121300.v1.1
prunus_persica	Prupe.5G115100_v2.0.a1
pyrus_communis	pycom06g09690
rosa_chinensis	RchiOBHm_Chr5g0005001 RchiOBHm_Chr7g0195451
rosa_laevigata	RLG00000004120 RLG00000031279
rosa_multiflora	Rmu_co8413909.1_g000001 Rmu_sc0010714.1_g000003 Rmu_sc0016543.1_g000004 Rmu_sc0018163.1_g000001 Rmu_sc0020160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260470
rosa_rugosa	Rorug04G0415100 Rorug04G0460000 Rorug07G0023200
rosa_samantha	Rh5AG042700 Rh5BG042400 Rh5BG086900 Rh5BG087100 Rh5CG047200 Rh5DG042700 Rh7AG150800 Rh7BG152400 Rh7CG156000 Rh7DG151800
rosa_wichuraiana	Rw5G004150 Rw7G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	225
AatII	GACGTC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	1146
AccBSI	CCGCTC	1 cut(s)	1312
AccII	CGCG	3 cut(s)	145, 648, 1653
AciI	CCGC	5 cut(s)	46, 120, 173, 1312, 1589
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	4 cut(s)	497, 707, 763, 1127
AcuI	CTGAAG	1 cut(s)	1086
AcyI	GRCGYC	2 cut(s)	104, 226
AfaI	GTAC	7 cut(s)	38, 290, 386, 770, 1466, 1537, 1852
AfiI	CCNNNNNNNGG	6 cut(s)	279, 280, 370, 834, 1146, 1810
AflII	CTTAAG	2 cut(s)	506, 1910
AhdI	GACNNNNNGTC	1 cut(s)	1905
AjnI	CCWGG	2 cut(s)	81, 1330
AjuI	GAANNNNNNNTTGG	4 cut(s)	396, 428, 909, 941
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
Alw21I	GWGCWC	2 cut(s)	1082, 1198
Alw26I	GTCTC	6 cut(s)	914, 1332, 1380, 1516, 1748, 1892
Alw44I	GTGCAC	1 cut(s)	1194
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	4 cut(s)	366, 443, 1445, 1772
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	1194
ApeKI	GCWGC	4 cut(s)	1157, 1450, 1586, 1925
ApoI	RAATTY	4 cut(s)	497, 707, 763, 1127
AseI	ATTAAT	1 cut(s)	1035
Asp700I	GAANNNNTTC	2 cut(s)	236, 638
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	5 cut(s)	106, 145, 431, 650, 1655
AspS9I	GGNCC	2 cut(s)	373, 1531
AsuHPI	GGTGA	2 cut(s)	109, 456
AsuII	TTCGAA	3 cut(s)	240, 501, 642
AvaI	CYCGRG	4 cut(s)	366, 443, 1445, 1772
AvaII	GGWCC	2 cut(s)	373, 1531
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	1198
BanI	GGYRCC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	1083
BbsI	GAAGAC	3 cut(s)	249, 1466, 1608
Bbv12I	GWGCWC	2 cut(s)	1082, 1198
BbvI	GCAGC	4 cut(s)	1144, 1437, 1573, 1912
BccI	CCATC	3 cut(s)	1051, 1634, 1838
BceAI	ACGGC	2 cut(s)	240, 1214
BciT130I	CCWGG	2 cut(s)	83, 1332
BclI	TGATCA	2 cut(s)	469, 736
BcoDI	GTCTC	6 cut(s)	914, 1332, 1380, 1516, 1748, 1892
BfaI	CTAG	6 cut(s)	32, 432, 531, 1398, 1436, 1972
BfmI	CTRYAG	1 cut(s)	214
BfoI	RGCGCY	2 cut(s)	107, 432
BfrI	CTTAAG	2 cut(s)	506, 1910
BisI	GCNGC	4 cut(s)	1158, 1451, 1587, 1926
BlnI	CCTAGG	1 cut(s)	31
BlpI	GCTNAGC	2 cut(s)	201, 1829
BlsI	GCNGC	4 cut(s)	1159, 1452, 1588, 1927
Bme1390I	CCNGG	2 cut(s)	83, 1332
Bme18I	GGWCC	2 cut(s)	373, 1531
BmeRI	GACNNNNNGTC	1 cut(s)	1905
BmeT110I	CYCGRG	4 cut(s)	366, 443, 1445, 1772
BmgT120I	GGNCC	2 cut(s)	373, 1531
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	83, 1332
BmsI	GCATC	4 cut(s)	43, 814, 1609, 1653
BoxI	GACNNNNGTC	1 cut(s)	83
BpiI	GAAGAC	3 cut(s)	249, 1466, 1608
BplI	GAGNNNNNCTC	2 cut(s)	1089, 1121
BpmI	CTGGAG	1 cut(s)	1256
Bpu1102I	GCTNAGC	2 cut(s)	201, 1829
Bpu14I	TTCGAA	3 cut(s)	240, 501, 642
BpuEI	CTTGAG	1 cut(s)	1091
Bsa29I	ATCGAT	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	2 cut(s)	104, 226
BsaI	GGTCTC	1 cut(s)	1332
BsaJI	CCNNGG	4 cut(s)	31, 71, 81, 1331
BsaXI	ACNNNNNCTCC	2 cut(s)	1679, 1709
Bsc4I	CCNNNNNNNGG	6 cut(s)	279, 280, 370, 834, 1146, 1810
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	1013, 1273
Bse3DI	GCAATG	1 cut(s)	1543
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	83, 1332
BseCI	ATCGAT	1 cut(s)	536
BseDI	CCNNGG	4 cut(s)	31, 71, 81, 1331
BseGI	GGATG	5 cut(s)	58, 81, 562, 829, 1783
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	6 cut(s)	279, 280, 370, 834, 1146, 1810
BseMI	GCAATG	1 cut(s)	1543
BseMII	CTCAG	7 cut(s)	153, 192, 210, 672, 1353, 1439, 1820
BseNI	ACTGG	2 cut(s)	1013, 1273
BseRI	GAGGAG	2 cut(s)	350, 856
BseSI	GKGCMC	1 cut(s)	1198
BseXI	GCAGC	4 cut(s)	1144, 1437, 1573, 1912
BseYI	CCCAGC	1 cut(s)	1958
BsgI	GTGCAG	1 cut(s)	1143
Bsh1236I	CGCG	3 cut(s)	145, 648, 1653
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	1082, 1198
BsiHKCI	CYCGRG	4 cut(s)	366, 443, 1445, 1772
BsiSI	CCGG	3 cut(s)	9, 101, 426
BslI	CCNNNNNNNGG	6 cut(s)	279, 280, 370, 834, 1146, 1810
BsmAI	GTCTC	6 cut(s)	914, 1332, 1380, 1516, 1748, 1892
BsmBI	CGTCTC	1 cut(s)	1748
BsmI	GAATGC	1 cut(s)	1970
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	1332
BsoBI	CYCGRG	4 cut(s)	366, 443, 1445, 1772
Bsp119I	TTCGAA	3 cut(s)	240, 501, 642
Bsp1286I	GDGCHC	2 cut(s)	1082, 1198
Bsp1407I	TGTACA	2 cut(s)	768, 1850
Bsp143I	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
Bsp1720I	GCTNAGC	2 cut(s)	201, 1829
BspACI	CCGC	5 cut(s)	46, 120, 173, 1312, 1589
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	7 cut(s)	154, 193, 209, 673, 1354, 1438, 1821
BspDI	ATCGAT	1 cut(s)	536
BspFNI	CGCG	3 cut(s)	145, 648, 1653
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	351
BspQI	GCTCTTC	2 cut(s)	748, 1710
BspT104I	TTCGAA	3 cut(s)	240, 501, 642
BspT107I	GGYRCC	1 cut(s)	103
BspTI	CTTAAG	2 cut(s)	506, 1910
BspTNI	GGTCTC	1 cut(s)	1332
BsrBI	CCGCTC	1 cut(s)	1312
BsrDI	GCAATG	1 cut(s)	1543
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	2 cut(s)	768, 1850
BsrI	ACTGG	2 cut(s)	1013, 1273
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	31, 71, 81, 1331
BssMI	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
BssNI	GRCGYC	2 cut(s)	104, 226
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	1083
Bst2UI	CCWGG	2 cut(s)	83, 1332
Bst4CI	ACNGT	2 cut(s)	925, 1535
Bst6I	CTCTTC	6 cut(s)	399, 748, 833, 912, 1710, 1814
BstACI	GRCGYC	2 cut(s)	104, 226
BstAFI	CTTAAG	2 cut(s)	506, 1910
BstAUI	TGTACA	2 cut(s)	768, 1850
BstBI	TTCGAA	3 cut(s)	240, 501, 642
BstC8I	GCNNGC	7 cut(s)	427, 627, 663, 1102, 1155, 1431, 1722
BstDEI	CTNAG	8 cut(s)	134, 162, 196, 201, 681, 1362, 1425, 1829
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	5 cut(s)	58, 81, 562, 829, 1783
BstFNI	CGCG	3 cut(s)	145, 648, 1653
BstH2I	RGCGCY	2 cut(s)	107, 432
BstHHI	GCGC	5 cut(s)	106, 145, 431, 650, 1655
BstKTI	GATC	6 cut(s)	25, 346, 472, 536, 739, 1266
BstMAI	GTCTC	6 cut(s)	914, 1332, 1380, 1516, 1748, 1892
BstMBI	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 1049, 1450, 1586, 1650, 1726
BstNI	CCWGG	2 cut(s)	83, 1332
BstNSI	RCATGY	2 cut(s)	1104, 1444
BstPAI	GACNNNNGTC	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 1330
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	1198
BstUI	CGCG	3 cut(s)	145, 648, 1653
BstV1I	GCAGC	4 cut(s)	1144, 1437, 1573, 1912
BstV2I	GAAGAC	3 cut(s)	249, 1466, 1608
Bsu15I	ATCGAT	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	58, 81, 562, 829, 1783
BtsIMutI	CAGTG	2 cut(s)	189, 1869
Cac8I	GCNNGC	7 cut(s)	427, 627, 663, 1102, 1155, 1431, 1722
CfoI	GCGC	5 cut(s)	106, 145, 431, 650, 1655
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	373, 1531
ClaI	ATCGAT	1 cut(s)	536
CseI	GACGC	2 cut(s)	1569, 1957
Csp6I	GTAC	7 cut(s)	37, 289, 385, 769, 1465, 1536, 1851
CviAII	CATG	7 cut(s)	40, 400, 611, 1101, 1166, 1441, 1750
CviQI	GTAC	7 cut(s)	37, 289, 385, 769, 1465, 1536, 1851
DdeI	CTNAG	8 cut(s)	134, 162, 196, 201, 681, 1362, 1425, 1829
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	6 cut(s)	24, 345, 471, 535, 738, 1265
DpnII	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	225
DriI	GACNNNNNGTC	1 cut(s)	1905
DseDI	GACNNNNNNGTC	1 cut(s)	225
Eam1104I	CTCTTC	6 cut(s)	399, 748, 833, 912, 1710, 1814
Eam1105I	GACNNNNNGTC	1 cut(s)	1905
EarI	CTCTTC	6 cut(s)	399, 748, 833, 912, 1710, 1814
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	1332
Eco32I	GATATC	1 cut(s)	1482
Eco47I	GGWCC	2 cut(s)	373, 1531
Eco57I	CTGAAG	1 cut(s)	1086
Eco88I	CYCGRG	4 cut(s)	366, 443, 1445, 1772
EcoRII	CCWGG	2 cut(s)	81, 1330
EcoRV	GATATC	1 cut(s)	1482
EcoT14I	CCWWGG	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	1748
FaeI	CATG	7 cut(s)	43, 403, 614, 1104, 1169, 1444, 1753
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 609, 641
FatI	CATG	7 cut(s)	39, 399, 610, 1100, 1165, 1440, 1749
FauI	CCCGC	1 cut(s)	53
FbaI	TGATCA	2 cut(s)	469, 736
Fnu4HI	GCNGC	4 cut(s)	1158, 1451, 1587, 1926
FokI	GGATG	5 cut(s)	65, 88, 549, 836, 1790
Fsp4HI	GCNGC	4 cut(s)	1158, 1451, 1587, 1926
FspBI	CTAG	6 cut(s)	32, 432, 531, 1398, 1436, 1972
GlaI	GCGC	5 cut(s)	105, 144, 430, 649, 1654
GluI	GCNGC	4 cut(s)	1158, 1451, 1587, 1926
GsaI	CCCAGC	1 cut(s)	1962
GsuI	CTGGAG	1 cut(s)	1256
HaeII	RGCGCY	2 cut(s)	107, 432
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	9, 101, 426
HgaI	GACGC	2 cut(s)	1569, 1957
HhaI	GCGC	5 cut(s)	106, 145, 431, 650, 1655
Hin1I	GRCGYC	2 cut(s)	104, 226
Hin1II	CATG	7 cut(s)	43, 403, 614, 1104, 1169, 1444, 1753
Hin6I	GCGC	5 cut(s)	104, 143, 429, 648, 1653
HinP1I	GCGC	5 cut(s)	104, 143, 429, 648, 1653
HincII	GTYRAC	2 cut(s)	322, 1561
HindII	GTYRAC	2 cut(s)	322, 1561
HindIII	AAGCTT	3 cut(s)	65, 477, 1109
HpaII	CCGG	3 cut(s)	9, 101, 426
HphI	GGTGA	2 cut(s)	109, 456
Hpy166II	GTNNAC	6 cut(s)	322, 373, 464, 1093, 1196, 1561
Hpy188I	TCNGA	9 cut(s)	22, 183, 211, 224, 231, 567, 741, 1486, 1897
Hpy8I	GTNNAC	6 cut(s)	322, 373, 464, 1093, 1196, 1561
Hpy99I	CGWCG	2 cut(s)	228, 231
HpyAV	CCTTC	7 cut(s)	226, 562, 649, 806, 1481, 1804, 1942
HpyCH4III	ACNGT	2 cut(s)	925, 1535
HpyCH4IV	ACGT	3 cut(s)	226, 336, 1463
HpyCH4V	TGCA	9 cut(s)	56, 593, 665, 1052, 1160, 1196, 1418, 1548, 1568
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 1049, 1450, 1586, 1650, 1726
HpyF3I	CTNAG	8 cut(s)	134, 162, 196, 201, 681, 1362, 1425, 1829
HpySE526I	ACGT	3 cut(s)	226, 336, 1463
Hsp92I	GRCGYC	2 cut(s)	104, 226
Hsp92II	CATG	7 cut(s)	43, 403, 614, 1104, 1169, 1444, 1753
HspAI	GCGC	5 cut(s)	104, 143, 429, 648, 1653
KasI	GGCGCC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Ksp22I	TGATCA	2 cut(s)	469, 736
Kzo9I	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
LguI	GCTCTTC	2 cut(s)	748, 1710
LmnI	GCTCC	4 cut(s)	363, 658, 1234, 1806
Lsp1109I	GCAGC	4 cut(s)	1144, 1437, 1573, 1912
LweI	GCATC	4 cut(s)	43, 814, 1609, 1653
MaeI	CTAG	6 cut(s)	32, 432, 531, 1398, 1436, 1972
MaeII	ACGT	3 cut(s)	226, 336, 1463
MaeIII	GTNAC	2 cut(s)	26, 1060
MalI	GATC	6 cut(s)	24, 345, 471, 535, 738, 1265
MbiI	CCGCTC	1 cut(s)	1312
MboI	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
MfeI	CAATTG	1 cut(s)	1178
MhlI	GDGCHC	2 cut(s)	1082, 1198
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	7 cut(s)	91, 188, 213, 1518, 1688, 1794, 1915
MmeI	TCCRAC	4 cut(s)	209, 234, 247, 431
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	236, 638
MseI	TTAA	6 cut(s)	495, 507, 1035, 1746, 1911, 1953
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	2 cut(s)	506, 1910
MspI	CCGG	3 cut(s)	9, 101, 426
MspR9I	CCNGG	2 cut(s)	83, 1332
MunI	CAATTG	1 cut(s)	1178
Mva1269I	GAATGC	1 cut(s)	1970
MvaI	CCWGG	2 cut(s)	83, 1332
MvnI	CGCG	3 cut(s)	145, 648, 1653
MwoI	GCNNNNNNNGC	6 cut(s)	151, 1049, 1450, 1586, 1650, 1726
NaeI	GCCGGC	1 cut(s)	427
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	7 cut(s)	43, 403, 614, 1104, 1169, 1444, 1753
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	148
NspI	RCATGY	2 cut(s)	1104, 1444
NspV	TTCGAA	3 cut(s)	240, 501, 642
PaeI	GCATGC	1 cut(s)	1104
PaeR7I	CTCGAG	2 cut(s)	366, 443
PciSI	GCTCTTC	2 cut(s)	748, 1710
PcsI	WCGNNNNNNNCGW	1 cut(s)	1802
PctI	GAATGC	1 cut(s)	1970
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	236, 638
PfeI	GAWTC	9 cut(s)	17, 250, 454, 685, 742, 890, 1183, 1892, 1915
PflMI	CCANNNNNTGG	1 cut(s)	1146
PkrI	GCNGC	4 cut(s)	1159, 1452, 1588, 1927
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	7 cut(s)	91, 188, 213, 1518, 1688, 1793, 1914
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	7 cut(s)	91, 188, 213, 1518, 1688, 1793, 1914
PshAI	GACNNNNGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	1035
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	81, 1330
PspFI	CCCAGC	1 cut(s)	1958
PspGI	CCWGG	2 cut(s)	81, 1330
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	373, 1531
PspXI	VCTCGAGB	2 cut(s)	366, 443
PvuI	CGATCG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	7 cut(s)	38, 290, 386, 770, 1466, 1537, 1852
RsaNI	GTAC	7 cut(s)	37, 289, 385, 769, 1465, 1536, 1851
SapI	GCTCTTC	2 cut(s)	748, 1710
SaqAI	TTAA	6 cut(s)	495, 507, 1035, 1746, 1911, 1953
SatI	GCNGC	4 cut(s)	1158, 1451, 1587, 1926
Sau3AI	GATC	6 cut(s)	22, 343, 469, 533, 736, 1263
Sau96I	GGNCC	2 cut(s)	373, 1531
SchI	GAGTC	7 cut(s)	91, 188, 213, 1518, 1688, 1794, 1915
ScrFI	CCNGG	2 cut(s)	83, 1332
SduI	GDGCHC	2 cut(s)	1082, 1198
SfaNI	GCATC	4 cut(s)	43, 814, 1609, 1653
SfcI	CTRYAG	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	105
Sfr274I	CTCGAG	2 cut(s)	366, 443
SfuI	TTCGAA	3 cut(s)	240, 501, 642
SinI	GGWCC	2 cut(s)	373, 1531
SlaI	CTCGAG	2 cut(s)	366, 443
SmlI	CTYRAG	5 cut(s)	366, 443, 506, 1106, 1910
SmoI	CTYRAG	5 cut(s)	366, 443, 506, 1106, 1910
SphI	GCATGC	1 cut(s)	1104
SsiI	CCGC	5 cut(s)	46, 120, 173, 1312, 1589
SspDI	GGCGCC	1 cut(s)	103
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	6 cut(s)	32, 432, 531, 1398, 1436, 1972
StyD4I	CCNGG	2 cut(s)	81, 1330
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	925, 1535
TaiI	ACGT	3 cut(s)	229, 339, 1466
TatI	WGTACW	2 cut(s)	768, 1850
TfiI	GAWTC	9 cut(s)	17, 250, 454, 685, 742, 890, 1183, 1892, 1915
Tru1I	TTAA	6 cut(s)	495, 507, 1035, 1746, 1911, 1953
Tru9I	TTAA	6 cut(s)	495, 507, 1035, 1746, 1911, 1953
TscAI	CASTG	2 cut(s)	196, 1876
TseI	GCWGC	4 cut(s)	1157, 1450, 1586, 1925
TspGWI	ACGGA	2 cut(s)	88, 158
TspRI	CASTG	2 cut(s)	196, 1876
Van91I	CCANNNNNTGG	1 cut(s)	1146
Vha464I	CTTAAG	2 cut(s)	506, 1910
VneI	GTGCAC	1 cut(s)	1194
VpaK11BI	GGWCC	2 cut(s)	373, 1531
VspI	ATTAAT	1 cut(s)	1035
XapI	RAATTY	4 cut(s)	497, 707, 763, 1127
XbaI	TCTAGA	1 cut(s)	1435
XceI	RCATGY	2 cut(s)	1104, 1444
XhoI	CTCGAG	2 cut(s)	366, 443
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	236, 638
XspI	CTAG	6 cut(s)	32, 432, 531, 1398, 1436, 1972
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.